RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ADAM5Q6NVV9 412 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 Q6ZS49 121 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 DPPA2Q7Z7J5 298 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 FAM185AQ8N0U4 392 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 FAM24BQ8N5W8 94 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 SUMF1Q8NBK3 374 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 MAFAQ8NHW3 353 aaPredicted RBP16.55■□□□□ 0.24
VPS28-213ENST00000530983 FAM213BQ8TBF2 198 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 TMEM56Q96MV1 263 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 HS3ST6Q96QI5 342 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 PAPOLGQ9BWT3 736 aaKnown RBP16.55■□□□□ 0.24
VPS28-213ENST00000530983 FGF23Q9GZV9 251 aaPredicted RBP16.55■□□□□ 0.24
VPS28-213ENST00000530983 CRIM1Q9NZV1 1036 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 RFNGQ9Y644 331 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 TMEM56-RWDD3S4R434 201 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 PCSK5Q92824 1860 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 A0A1B0GV50 99 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 AP4M1O00189 453 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 GDF1P27539 372 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 GFRA1P56159 465 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 WDR5BQ86VZ2 330 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 CPNE4Q96A23 557 aaPredicted RBP16.54■□□□□ 0.24
VPS28-213ENST00000530983 DOCK10Q96BY6 2186 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 ZNHIT1O43257 154 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 ARG1P05089 322 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 NKX2-1P43699 371 aaPredicted RBP16.54■□□□□ 0.24
VPS28-213ENST00000530983 CLINT1Q14677 625 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 ZNF818PQ6ZRF7 136 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 OR56B2PQ8NGI1 322 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 SLAMF9Q96A28 289 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 POM121Q96HA1 1249 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 GPHA2Q96T91 129 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 SLC35B3Q9H1N7 401 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 Q9N2K0 584 aa16.54■□□□□ 0.24
VPS28-213ENST00000530983 TNRC18O15417 2968 aaPredicted RBP16.54■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A10PA6NDY2 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A18PA6NE21 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A16PA6NEW6 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A20PA6NIJ5 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A8PA6NJQ4 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A7PA6NKC0 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A22PA8MWA6 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A12PA8MX19 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A5PA8MXJ8 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A23PA8MXZ1 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 NAPSAO96009 420 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A15PP0C7V4 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A13PP0C7W8 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A14PP0C7W9 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM90A24PP0C7X0 464 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 RD3LP0DJH9 198 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 DUSP3P51452 185 aaPredicted RBP16.53■□□□□ 0.24
VPS28-213ENST00000530983 MALSU1Q96EH3 234 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 PBDC1Q9BVG4 233 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 FAM86C1Q9NVL1 165 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 UBE2J1Q9Y385 318 aaPredicted RBP16.53■□□□□ 0.24
VPS28-213ENST00000530983 F10P00742 488 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 SCTP09683 121 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 HERPUD1Q15011 391 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 SPIN3Q5JUX0 258 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 NCMAPQ5T1S8 102 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 ZNF695Q8IW36 515 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 SELENOHQ8IZQ5 122 aaKnown RBP16.53■□□□□ 0.24
VPS28-213ENST00000530983 TMEM171Q8WVE6 324 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 TMPRSS5Q9H3S3 457 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 TCFL5Q9UL49 500 aa16.53■□□□□ 0.24
VPS28-213ENST00000530983 TRIOBPQ9H2D6 2365 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 IGKV1D-13A0A0B4J2D9 117 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 IGHEP01854 428 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 IGKV1-13P0DP09 117 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 ATP6V0CP27449 155 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 RND3P61587 244 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 PRDX4Q13162 271 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 ZNF266Q14584 549 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 NRN1LQ496H8 165 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 GAPTQ8N292 157 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 TMEM45BQ96B21 275 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 REPIN1Q9BWE0 567 aaKnown RBP16.52■□□□□ 0.24
VPS28-213ENST00000530983 KCNJ16Q9NPI9 418 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 IL36RNQ9UBH0 155 aa16.52■□□□□ 0.24
VPS28-213ENST00000530983 MRPS18CQ9Y3D5 142 aaKnown RBP16.52■□□□□ 0.24
VPS28-213ENST00000530983 A0A1B0GW64 132 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 A0A1W2PPE2 198 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 ZNF724A8MTY0 619 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 SSSCA1O60232 199 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 PITX3O75364 302 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 TK1P04183 234 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 OMGP23515 440 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 SULT1A1P50225 295 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 GPM6AP51674 278 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 CXorf66Q5JRM2 361 aaPredicted RBP16.52■□□□□ 0.23
VPS28-213ENST00000530983 LFNGQ8NES3 379 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 RARRES2Q99969 163 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 GGACTQ9BVM4 153 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 MAGT1Q9H0U3 335 aa16.52■□□□□ 0.23
VPS28-213ENST00000530983 LYRM2Q9NU23 88 aaPredicted RBP16.52■□□□□ 0.23
VPS28-213ENST00000530983 GPR37O15354 613 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 ADAM20O43506 726 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 OR13C7P0DN81 318 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 CCL2P13500 99 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms