RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CRCT1Q9UGL9 99 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 COL11A1P12107 1806 aaPredicted RBP1.51□□□□□ -2.17
CD44-215ENST00000525241 USP24Q9UPU5 2620 aa1.51□□□□□ -2.17
CD44-215ENST00000525241 AK9Q5TCS8 1911 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 TNIKQ9UKE5 1360 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 TRGV4A0A0C4DH28 118 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 BOLA2-SMG1P6H3BVE0 249 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 LECT2O14960 151 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 TCF21O43680 179 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 SH2D1AO60880 128 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 SC5DO75845 299 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 VAPBO95292 243 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 OTCP00480 354 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 IGKV5-2P06315 115 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 PSKH1P11801 424 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 BGNP21810 368 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 PLTPP55058 493 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 RAB38P57729 211 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 PSG4Q00888 419 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 STK38Q15208 465 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 GOLGA7BQ2TAP0 167 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 C6orf183Q5T699 404 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 ELP2Q6IA86 826 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 FAHD1Q6P587 224 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 PID1Q7Z2X4 250 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 ZIC4Q8N9L1 334 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 CMBLQ96DG6 245 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 CPB2Q96IY4 423 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 VCX3AQ9NNX9 186 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 LINC00588Q9Y4M8 146 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 KMT2EQ8IZD2 1858 aa1.5□□□□□ -2.17
CD44-215ENST00000525241 IGHV2-26A0A0B4J1V2 119 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 ENSAO43768 121 aaKnown RBP1.49□□□□□ -2.17
CD44-215ENST00000525241 SOX14O95416 240 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 CA2P00918 260 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 P0DMU3 169 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 FAM231AP0DMU4 169 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 FAM231CP0DMU5 169 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 EVI2BP34910 448 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 MMDQ15546 238 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 HNRNPA1L2Q32P51 320 aaKnown RBP1.49□□□□□ -2.17
CD44-215ENST00000525241 CAVIN4Q5BKX8 364 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 C10orf91Q5T1B1 145 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 SLC25A25Q6KCM7 469 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 TCF23Q7RTU1 214 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 ASCC1Q8N9N2 400 aaKnown RBP1.49□□□□□ -2.17
CD44-215ENST00000525241 FER1L6-AS1Q8NA97 138 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 NELFBQ8WX92 580 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 CDKL2Q92772 493 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 REEP6Q96HR9 211 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 SLC23A2Q9UGH3 650 aa1.49□□□□□ -2.17
CD44-215ENST00000525241 TTPAP49638 278 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 DSTNP60981 165 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 C2orf80Q0P641 193 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 Q6ZRU5 148 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 FAM58AQ8N1B3 248 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 SPICQ8N5J4 248 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 OR11G2Q8NGC1 345 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 OR4A5Q8NH83 315 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 MITD1Q8WV92 249 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 CIB1Q99828 191 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 SUCNR1Q9BXA5 334 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 ARL6Q9H0F7 186 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 LRRC19Q9H756 370 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 ZNF286AQ9HBT8 521 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 RMND1Q9NWS8 449 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 RPUSD1Q9UJJ7 312 aaKnown RBP1.48□□□□□ -2.17
CD44-215ENST00000525241 PHLDA3Q9Y5J5 127 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 URGCP-MRPS24S4R325 110 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 HSPE1-MOB4S4R3N1 261 aa1.48□□□□□ -2.17
CD44-215ENST00000525241 SHANK3Q9BYB0 1731 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 SRCAPQ6ZRS2 3230 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 C17orf98A8MV24 154 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 E7EWF7 191 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 SPOPO43791 374 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 PDCD6O75340 191 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 GYPCP04921 128 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 GUSBP08236 651 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 OR12D1P0DN82 309 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 SLC2A1P11166 492 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 PSMB9P28065 219 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 DEKP35659 375 aaKnown RBP1.47□□□□□ -2.17
CD44-215ENST00000525241 RAB25P57735 213 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 BAXQ07812 192 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 KRTCAP2Q8N6L1 136 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 OR8G5Q8NG78 346 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 OR4K13Q8NH42 304 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 MFSD8Q8NHS3 518 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 LGALS14Q8TCE9 139 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 CASTOR1Q8WTX7 329 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 KCTD4Q8WVF5 259 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 COPS4Q9BT78 406 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 MFSD1Q9H3U5 465 aa1.47□□□□□ -2.17
CD44-215ENST00000525241 DOCK6Q96HP0 2047 aa1.46□□□□□ -2.18
CD44-215ENST00000525241 TP53I11O14683 189 aa1.46□□□□□ -2.18
CD44-215ENST00000525241 CRTAPO75718 401 aaPredicted RBP1.46□□□□□ -2.18
CD44-215ENST00000525241 ZMPSTE24O75844 475 aa1.46□□□□□ -2.18
CD44-215ENST00000525241 PTNP21246 168 aa1.46□□□□□ -2.18
CD44-215ENST00000525241 DNASE1L1P49184 302 aa1.46□□□□□ -2.18
CD44-215ENST00000525241 CEACAM21Q3KPI0 293 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms