RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 RELBQ01201 579 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 NHLRC3Q5JS37 347 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 BRICD5Q6PL45 260 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 RNF144BQ7Z419 303 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 JAGN1Q8N5M9 183 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 ZFP41Q8N8Y5 198 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 PGLYRP3Q96LB9 341 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 NPFFR1Q9GZQ6 430 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 FKBP14Q9NWM8 211 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 ING3Q9NXR8 418 aa13.22□□□□□ -0.29
LSM1-205ENST00000523511 PNMA8CA0A1B0GUJ8 204 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 ERICH4A6NGS2 130 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 ODF3BA8MYP8 253 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 TIMM23O14925 209 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 OR7C1O76099 320 aaPredicted RBP13.21□□□□□ -0.29
LSM1-205ENST00000523511 CDRT1O95170 752 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 GZMHP20718 246 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 BRS3P32247 399 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 OR3A4PP47883 348 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 GPR50Q13585 617 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 RBM39Q14498 530 aaKnown RBP13.21□□□□□ -0.29
LSM1-205ENST00000523511 ATXN7L3Q14CW9 347 aaPredicted RBP13.21□□□□□ -0.29
LSM1-205ENST00000523511 SPHARQ15513 63 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 LY6EQ16553 131 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 MPV17LQ2QL34 196 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 SLC35E4Q6ICL7 350 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 LAIR2Q6ISS4 152 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 CRIP3Q6Q6R5 217 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 Q6ZSV7 163 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 NKAIN3Q8N8D7 197 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 OR2T6Q8NHC8 308 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 OR14A2Q96R54 314 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 RANBP3Q9H6Z4 567 aaPredicted RBP13.21□□□□□ -0.29
LSM1-205ENST00000523511 IFT22Q9H7X7 185 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 TCF7L1Q9HCS4 588 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 DPM3Q9P2X0 92 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 FBLN5Q9UBX5 448 aa13.21□□□□□ -0.29
LSM1-205ENST00000523511 TRBV5-7A0A0A0MS05 114 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 KBTBD11-OT1A0A1B0GTJ5 212 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 LEUTXA8MZ59 168 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 MAS1P04201 325 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 SERPINA2P20848 420 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 GABRA5P31644 462 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 RANBP1P43487 201 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 KIR2DS4P43632 304 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 DYNLT3P51808 116 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 AQP4P55087 323 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 RPS11P62280 158 aaKnown RBP eCLIP13.2□□□□□ -0.3
LSM1-205ENST00000523511 MED22Q15528 200 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 SLC22A6Q4U2R8 563 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 PRR31Q5SQ13 230 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 LHFPL4Q7Z7J7 247 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 OR13C5Q8NGS8 318 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 OR10K1Q8NGX5 313 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 C17orf50Q8WW18 174 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 CAPSLQ8WWF8 208 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 WFDC12Q8WWY7 111 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 TAF15Q92804 592 aaKnown RBP eCLIP13.2□□□□□ -0.3
LSM1-205ENST00000523511 AJUBAQ96IF1 538 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 UQCC2Q9BRT2 126 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 DPCDQ9BVM2 203 aaPredicted RBP13.2□□□□□ -0.3
LSM1-205ENST00000523511 RAB9BQ9NP90 201 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 GHRLQ9UBU3 117 aa13.2□□□□□ -0.3
LSM1-205ENST00000523511 TRAV24A0A0B4J272 114 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 A0A1W2PPK0 400 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 M0QZ24 198 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 F2RL2O00254 374 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 HSPB6O14558 160 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 MYF6P23409 242 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 RBM11P57052 281 aaKnown RBP13.19□□□□□ -0.3
LSM1-205ENST00000523511 PAX5Q02548 391 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 PIGYQ3MUY2 71 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 ACSM3Q53FZ2 586 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 ATAD3CQ5T2N8 411 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 CCDC144NLQ6NUI1 221 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 SLC16A12Q6ZSM3 486 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 TCF23Q7RTU1 214 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 OR10A7Q8NGE5 316 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 NEK7Q8TDX7 302 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 AKR1E2Q96JD6 320 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 DERL3Q96Q80 235 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 ANKRD60Q9BZ19 345 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 BLOC1S6Q9UL45 172 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 MRPS28Q9Y2Q9 187 aaKnown RBP13.19□□□□□ -0.3
LSM1-205ENST00000523511 HILPDAQ9Y5L2 63 aa13.19□□□□□ -0.3
LSM1-205ENST00000523511 FBN3Q75N90 2809 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 MCRIP1C9JLW8 97 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 RGS10O43665 173 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 MNDAP41218 407 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 GLP1RP43220 463 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 TRAM1Q15629 374 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 PRAMEF5Q5TYX0 476 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 GLT8D1Q68CQ7 371 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 AWAT2Q6E213 333 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 GLIPR1L1Q6UWM5 242 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 SUMF2Q8NBJ7 301 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 NRG4Q8WWG1 115 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 UFD1Q92890 307 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 MUL1Q969V5 352 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 COQ2Q96H96 371 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms