RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 RBM39Q14498 530 aaKnown RBP13.48□□□□□ -0.25
LSM1-204ENST00000522515 EDDM3AQ14507 147 aa13.48□□□□□ -0.25
LSM1-204ENST00000522515 CDNFQ49AH0 187 aa13.48□□□□□ -0.25
LSM1-204ENST00000522515 GDPD3Q7L5L3 318 aa13.48□□□□□ -0.25
LSM1-204ENST00000522515 COQ2Q96H96 371 aa13.48□□□□□ -0.25
LSM1-204ENST00000522515 NUDT16L1Q9BRJ7 211 aaKnown RBP13.48□□□□□ -0.25
LSM1-204ENST00000522515 PTTG2Q9NZH5 202 aa13.48□□□□□ -0.25
LSM1-204ENST00000522515 EXTL2Q9UBQ6 330 aa13.48□□□□□ -0.25
LSM1-204ENST00000522515 ELF5Q9UKW6 265 aaPredicted RBP13.48□□□□□ -0.25
LSM1-204ENST00000522515 ITPR3Q14573 2671 aa13.48□□□□□ -0.25
LSM1-204ENST00000522515 AKAP9Q99996 3911 aa13.48□□□□□ -0.25
LSM1-204ENST00000522515 CR1P17927 2039 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 KIAA1324LA8MWY0 1029 aaPredicted RBP13.47□□□□□ -0.25
LSM1-204ENST00000522515 H7C1Q1 480 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 KCNJ3P48549 501 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 EDDM3BP56851 147 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 ZNF260Q3ZCT1 412 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 TMEM69Q5SWH9 247 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 CNIH2Q6PI25 160 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 BTN2A1Q7KYR7 527 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 H1FXQ92522 213 aaKnown RBP13.47□□□□□ -0.25
LSM1-204ENST00000522515 DIRAS2Q96HU8 199 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 WDFY2Q96P53 400 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 ETAA1Q9NY74 926 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 ADAM30Q9UKF2 790 aa13.47□□□□□ -0.25
LSM1-204ENST00000522515 GPR37O15354 613 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 PTHLHP12272 177 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 S100A5P33763 92 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 GLIPR1P48060 266 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 TAS2R20P59543 309 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 LCN2P80188 198 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 KRBOX4Q5JUW0 171 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 RSBN1Q5VWQ0 802 aaPredicted RBP13.46□□□□□ -0.25
LSM1-204ENST00000522515 OR6Q1Q8NGQ2 317 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 LPAR2Q9HBW0 351 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 AK3Q9UIJ7 227 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 OTOGQ6ZRI0 2925 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 ABCA2Q9BZC7 2435 aa13.46□□□□□ -0.25
LSM1-204ENST00000522515 MALRD1Q5VYJ5 2156 aa13.46□□□□□ -0.26
LSM1-204ENST00000522515 MEX3AA1L020 520 aaKnown RBP13.45□□□□□ -0.26
LSM1-204ENST00000522515 TMEM235A6NFC5 223 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 A8MXK9 166 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 ERP29P30040 261 aaKnown RBP13.45□□□□□ -0.26
LSM1-204ENST00000522515 P2RX3P56373 397 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 ZNF497Q6ZNH5 498 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 HDHD3Q9BSH5 251 aaPredicted RBP13.45□□□□□ -0.26
LSM1-204ENST00000522515 DCTN5Q9BTE1 182 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 AUNIPQ9H7T9 357 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.45□□□□□ -0.26
LSM1-204ENST00000522515 C19orf12Q9NSK7 152 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 KIF25Q9UIL4 384 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 MRPS7Q9Y2R9 242 aaKnown RBP13.45□□□□□ -0.26
LSM1-204ENST00000522515 SERPINE3A8MV23 424 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 C22orf46C9J442 243 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 HLA-DQB1P01920 261 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 GSTP1P09211 210 aaKnown RBP13.45□□□□□ -0.26
LSM1-204ENST00000522515 TALDO1P37837 337 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 PAX5Q02548 391 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 ARL6IP1Q15041 203 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 TMEM249Q2WGJ8 235 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 SLC35E4Q6ICL7 350 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 GAPTQ8N292 157 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 C1orf159Q96HA4 380 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 RPUSD1Q9UJJ7 312 aaKnown RBP13.45□□□□□ -0.26
LSM1-204ENST00000522515 DOCK11Q5JSL3 2073 aa13.45□□□□□ -0.26
LSM1-204ENST00000522515 MED13LQ71F56 2210 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 TEX15Q9BXT5 2789 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 YLPM1P49750 1951 aaKnown RBP13.44□□□□□ -0.26
LSM1-204ENST00000522515 ZNF469Q96JG9 3925 aaPredicted RBP13.44□□□□□ -0.26
LSM1-204ENST00000522515 LOC105371242A0A075B767 164 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 MEIKINA0A087WXM9 373 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 ODAMA1E959 279 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 SMAD7O15105 426 aaKnown RBP13.44□□□□□ -0.26
LSM1-204ENST00000522515 CA11O75493 328 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 FOXH1O75593 365 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 ECDO95905 644 aaPredicted RBP13.44□□□□□ -0.26
LSM1-204ENST00000522515 MT-ND4P03905 459 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 RPL31P62899 125 aaKnown RBP13.44□□□□□ -0.26
LSM1-204ENST00000522515 HACD4Q5VWC8 232 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 CD276Q5ZPR3 534 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 CCDC190Q86UF4 302 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 GCDHQ92947 438 aaPredicted RBP13.44□□□□□ -0.26
LSM1-204ENST00000522515 CMSS1Q9BQ75 279 aaKnown RBP13.44□□□□□ -0.26
LSM1-204ENST00000522515 ARHGAP32A7KAX9 2087 aa13.44□□□□□ -0.26
LSM1-204ENST00000522515 TRBV23-1A0A0A0MS06 115 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 TRAV39A0A0B4J263 110 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 TMEM30CPA0ZSE6 113 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 FUOMA2VDF0 154 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 NAPSAO96009 420 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 MELTFP08582 738 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 MNDAP41218 407 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 PAX2Q02962 417 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 ARFRP1Q13795 201 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 TMEM200BQ69YZ2 307 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 Q6ZPA2 131 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 SNX29P2Q8IUI4 249 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 FAM185AQ8N0U4 392 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 OR4K15Q8NH41 348 aa13.43□□□□□ -0.26
LSM1-204ENST00000522515 MRPL30Q8TCC3 161 aaKnown RBP13.43□□□□□ -0.26
LSM1-204ENST00000522515 CCDC107Q8WV48 283 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms