RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PLAURQ03405 335 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 PAQR4Q8N4S7 273 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM252Q8N6L7 170 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 OR52M1Q8NGK5 317 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 GALMQ96C23 342 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 SMDT1Q9H4I9 107 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 KCNIP2Q9NS61 270 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 KIAA1456Q9P272 454 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 LOXL2Q9Y4K0 774 aa7.33□□□□□ -1.24
LIMCH1-216ENST00000512820 IGHV5-10-1A0A0J9YXX1 117 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 LOC390937A0A1W2PQ73 354 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 PITX3O75364 302 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 DANCRP0C864 163 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 FOXO1Q12778 655 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 SLC10A1Q14973 349 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 Q96M66 194 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 FER1L6-AS2Q96M78 137 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 KLHDC3Q9BQ90 382 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 SH3BGRL3Q9H299 93 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 SIRT7Q9NRC8 400 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 CASP8AP2Q9UKL3 1982 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 THSD7BQ9C0I4 1608 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 F6UZH7 168 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 RPL36A-HNRNPH2H7BZ11 118 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 LINC00271P0C7V0 271 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 PPP1CCP36873 323 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 GALR1P47211 349 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 MLF1P58340 268 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 SNAI3Q3KNW1 292 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 CYB561D1Q8N8Q1 229 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 M1APQ8TC57 530 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 FSCN3Q9NQT6 498 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 NPIPB7O75200 414 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 ACTL6BO94805 426 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 OPN1MWP04001 364 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 OPN1MW2P0DN77 364 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 OPN1MW3P0DN78 364 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 SLC25A6P12236 298 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 SELEP16581 610 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF90Q03938 601 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 COL19A1Q14993 1142 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 VHLLQ6RSH7 139 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 MOB1BQ7L9L4 216 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 SLC25A22Q9H936 323 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 GPR35Q9HC97 309 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 TDRD6O60522 2096 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 ELOA3CA0A087WX78 387 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 PRR19A6NJB7 356 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 F8VVB4 439 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 F8VWA3 439 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 LINC01387J3KSC0 135 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 FGF16O43320 207 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 RAMP1O60894 148 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 CELA2AP08217 269 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 GPR12P47775 334 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 FFAR4Q5NUL3 377 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 GCNT2Q8N0V5 402 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF383Q8NA42 475 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 SMIM8Q96KF7 97 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 CHRNA10Q9GZZ6 450 aa7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 RYDENQ9NUL5 291 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-216ENST00000512820 B4DEV8 164 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF92Q03936 586 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM187Q14656 261 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 FAM166AQ6J272 317 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 SLC25A45Q8N413 288 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 OR2Y1Q8NGV0 311 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 ABHD3Q8WU67 409 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 MOB3AQ96BX8 217 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 IP6K3Q96PC2 410 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 RARRES2Q99969 163 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 FAM173AQ9BQD7 235 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 HSF4Q9ULV5 492 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 BRWD1Q9NSI6 2320 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 XKRY2A2RUG3 117 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 CA11O75493 328 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 NGFP01138 241 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 CCL4P13236 92 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 PSG4Q00888 419 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 TGIF1Q15583 401 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 RSPO4Q2I0M5 234 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 CXorf66Q5JRM2 361 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM178AQ8NBL3 297 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 APCDD1LQ8NCL9 501 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 SNX22Q96L94 193 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM222Q9H0R3 208 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 TAAR3PQ9P1P4 343 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 LY86O95711 162 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 KLK2P20151 261 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 MPZP25189 248 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 HFEQ30201 348 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 KHDC3LQ587J8 217 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 BIVMQ86UB2 503 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 LILRB1Q8NHL6 650 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 TWSG1Q9GZX9 223 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 KLF13Q9Y2Y9 288 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM30CPA0ZSE6 113 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 TRA2AQ13595 282 aaKnown RBP eCLIP7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 BSXQ3C1V8 233 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 Q8IYB0 196 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms