RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 RAB9BQ9NP90 201 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 FAM118AQ9NWS6 357 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 CHCHD3Q9NX63 227 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 AP4S1Q9Y587 144 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 IGKV1-9A0A0C4DH69 117 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 J3QR06 171 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 SLC16A6O15403 523 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 RRP9O43818 475 aaKnown RBP16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 SNRNP70P08621 437 aaKnown RBP16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 KIR3DL2P43630 455 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 C11orf87Q6NUJ2 197 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 TEX38Q6PEX7 206 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 OR2W3Q7Z3T1 314 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 ZNF695Q8IW36 515 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 RDH10Q8IZV5 341 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 OR5D18Q8NGL1 313 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 OR56B4Q8NH76 319 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 CIB1Q99828 191 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 IDI2-AS1Q9NZ38 188 aa16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 SIRT4Q9Y6E7 314 aaPredicted RBP16.7■□□□□ 0.26
SQSTM1-210ENST00000506042 H0YJX3 145 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 LY6LH3BQJ8 138 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 SLC33A1O00400 549 aaPredicted RBP16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 IL3RAP26951 378 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 EPHA2P29317 976 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 KRTAP10-11P60412 298 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 ISL1P61371 349 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 RNF144BQ7Z419 303 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 ZNF329Q86UD4 541 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 KIRREL1Q96J84 757 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 GPER1Q99527 375 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 GABARAPL3Q9BY60 117 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 CALYQ9NYX4 217 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 FRRS1LQ9P0K9 344 aa16.69■□□□□ 0.26
SQSTM1-210ENST00000506042 AP4M1O00189 453 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 IL1AP01583 271 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 AMY1AP04745 511 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 AMY2AP04746 511 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 RAB25P57735 213 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 CXorf66Q5JRM2 361 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 ACBD7Q8N6N7 88 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 C5orf56Q8N8D9 126 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 OR51T1Q8NGJ9 327 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 OR5M8Q8NGP6 311 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 OR8U1Q8NH10 309 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 EME1Q96AY2 570 aa16.68■□□□□ 0.26
SQSTM1-210ENST00000506042 SULT1B1O43704 296 aa16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 MPZL2O60487 215 aa16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 GAPDHP04406 335 aaKnown RBP16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 CCDC159P0C7I6 412 aa16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 ZNF85Q03923 595 aa16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 KISS1Q15726 138 aa16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 C8orf86Q6ZUL3 223 aa16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 DRAM1Q8N682 238 aa16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 TSEN15Q8WW01 171 aaKnown RBP16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 COQ2Q96H96 371 aa16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 S100A13Q99584 98 aa16.67■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A18PA6NE21 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A16PA6NEW6 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A20PA6NIJ5 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 SH2D7A6NKC9 451 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 TMEM212A6NML5 194 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A9PA6NNJ1 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 NCBP2LA6PVI3 153 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A12PA8MX19 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A5PA8MXJ8 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 J3QLW9 94 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 ZFPL1O95159 310 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A15PP0C7V4 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A13PP0C7W8 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A14PP0C7W9 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 FAM90A24PP0C7X0 464 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 ZNF19P17023 458 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 ALKBH1Q13686 389 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 IL13RA2Q14627 380 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 RSU1Q15404 277 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 C9orf66Q5T8R8 295 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 C1orf146Q5VVC0 180 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 BAIAP2L2Q6UXY1 529 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 PXT1Q8NFP0 134 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 RNFT2Q96EX2 444 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 SPACA5Q96QH8 159 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 KIF25Q9UIL4 384 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 DHDHQ9UQ10 334 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 MYRFQ9Y2G1 1151 aa16.66■□□□□ 0.26
SQSTM1-210ENST00000506042 IGKV1-12A0A0C4DH73 117 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 HSPB6O14558 160 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 IGKV1D-33P01593 117 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 IGKV1-33P01594 117 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 IGKV1D-12P01611 117 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 IGHG2P01859 326 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 CD2P06729 351 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 GZMHP20718 246 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 C17orf58Q2M2W7 97 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 ZNF691Q5VV52 312 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 ELP2Q6IA86 826 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 Q6P435 159 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 C10orf99Q6UWK7 81 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 STPG2Q8N412 459 aa16.65■□□□□ 0.26
SQSTM1-210ENST00000506042 OR2T10Q8NGZ9 312 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms