RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SOX8P57073 446 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 TAS2R45P59539 299 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 ATP6V1FQ16864 119 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 SNAI3Q3KNW1 292 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 SRXN1Q9BYN0 137 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 LOC101059948A0A1B0GTJ6 334 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 CYTIPO60759 359 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 DEDDO75618 318 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 GABRA4P48169 554 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 EWSR1Q01844 656 aaKnown RBP eCLIP9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 ALKBH6Q3KRA9 238 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 HIKESHIQ53FT3 197 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 LAMTOR1Q6IAA8 161 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF441Q8N8Z8 693 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 DEFB124Q8NES8 71 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 DEFB108BQ8NET1 73 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 NFAM1Q8NET5 270 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 OR10X1Q8NGY0 326 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 RPUSD4Q96CM3 377 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 CCL28Q9NRJ3 127 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 WSB1Q9Y6I7 421 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 TCF20Q9UGU0 1960 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 ADAM10O14672 748 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 RAB7AP51149 207 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 FGF12P61328 243 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 WFDC8Q8IUA0 241 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 HAND1O96004 215 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 Q5BKY6 102 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 TMEM255AQ5JRV8 349 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 FADS6Q8N9I5 356 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 UBALD1Q8TB05 177 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 LRRC29Q8WV35 223 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 LOXL4Q96JB6 756 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 CABLES2Q9BTV7 478 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 SLC7A10Q9NS82 523 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 SPRY3O43610 288 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 GAPDHP04406 335 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 PMELP40967 661 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 AKR1C3P42330 323 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 OR3A1P47881 315 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 H3F3AP84243 136 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 INO80CQ6PI98 192 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 OR10AD1Q8NGE0 317 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 Q96M66 194 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 SOX7Q9BT81 388 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 NPTNQ9Y639 398 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 A0A1B0GU03 582 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 NKX2-6A6NCS4 301 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 CRYM-AS1A6NIL9 109 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 M0R1X1 148 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 MELTFP08582 738 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 OR13D1Q8NGV5 346 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 ADAMTS17Q8TE56 1095 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 C5orf66Q9H5L9 145 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 OR5AC2Q9NZP5 309 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 IGKV1D-43A0A0B4J1Z2 117 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 MFNGO00587 321 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 SYNGR2O43760 224 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 CT45A6P0DMU7 189 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 CT45A5P0DMU8 189 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 CT45A7P0DMV0 189 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 TNFRSF1AP19438 455 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 TMEM50BP56557 158 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 ENDOGQ14249 297 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 CT45A1Q5HYN5 189 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 SLC23A3Q6PIS1 610 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 CT45A3Q8NHU0 189 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 PSG11Q9UQ72 335 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 V9GYS6 101 aa9.36□□□□□ -0.91
LIMCH1-205ENST00000503057 RBFOX3A6NFN3 312 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 MASP2O00187 686 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF83P51522 516 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 ERHP84090 104 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 UNC119Q13432 240 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 GABRA6Q16445 453 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 OR5D13Q8NGL4 314 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 AQP10Q96PS8 301 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 PRDM14Q9GZV8 571 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 FZR1Q9UM11 496 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 GPR37O15354 613 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 GALR2O43603 387 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 CHST1O43916 411 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 CD200P41217 278 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 P2RY4P51582 365 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 UBE2V2Q15819 145 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM209AQ5JX71 171 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 CLEC9AQ6UXN8 241 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 BHLHA15Q7RTS1 189 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 MDP1Q86V88 176 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 PRR32B1ATL7 298 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 NPIPB7O75200 414 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 PITX3O75364 302 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF205O95201 554 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 HEXAP06865 529 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 RAB13P51153 203 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 ANKRD55Q3KP44 614 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 Q3ZCU0 254 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF574Q6ZN55 896 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 ZBTB34Q8NCN2 500 aa9.35□□□□□ -0.91
LIMCH1-205ENST00000503057 COMMD5Q9GZQ3 224 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms