RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 TRDCB7Z8K6 153 aa10.13□□□□□ -0.79
HDAC4-210ENST00000493582 M0QZK8 103 aa10.13□□□□□ -0.79
HDAC4-210ENST00000493582 GGCTO75223 188 aaKnown RBP10.13□□□□□ -0.79
HDAC4-210ENST00000493582 ZNF776Q68DI1 518 aaPredicted RBP10.13□□□□□ -0.79
HDAC4-210ENST00000493582 ZNF695Q8IW36 515 aa10.13□□□□□ -0.79
HDAC4-210ENST00000493582 UEVLDQ8IX04 471 aa10.13□□□□□ -0.79
HDAC4-210ENST00000493582 RPUSD4Q96CM3 377 aaKnown RBP10.13□□□□□ -0.79
HDAC4-210ENST00000493582 PGAM5Q96HS1 289 aa10.13□□□□□ -0.79
HDAC4-210ENST00000493582 Q96M66 194 aa10.13□□□□□ -0.79
HDAC4-210ENST00000493582 ASCL3Q9NQ33 180 aa10.13□□□□□ -0.79
HDAC4-210ENST00000493582 F5H5K5 113 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 H7BYZ3 331 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 MPPED1O15442 326 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 CDS2O95674 445 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 CRYABP02511 175 aaKnown RBP10.12□□□□□ -0.79
HDAC4-210ENST00000493582 AADACP22760 399 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 MSX1P28360 303 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 PRSS12P56730 875 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 CLDN17P56750 224 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 CST9LP1Q5W188 147 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 ALKBH2Q6NS38 261 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 OR5B12Q96R08 314 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 ANGPTL4Q9BY76 406 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 TRAV1-1A0A0B4J248 108 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 SIAH2O43255 324 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 CCL1P22362 96 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 TNFSF10P50591 281 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 TMEM241Q24JQ0 296 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 BSXQ3C1V8 233 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 HLA-DQA1Q5Y7H0 255 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 C16orf47Q6ZP98 133 aaPredicted RBP10.12□□□□□ -0.79
HDAC4-210ENST00000493582 CAPNS2Q96L46 248 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 ZNF385AQ96PM9 386 aaKnown RBP10.12□□□□□ -0.79
HDAC4-210ENST00000493582 ATP5SQ99766 215 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 PNRC2Q9NPJ4 139 aaKnown RBP10.12□□□□□ -0.79
HDAC4-210ENST00000493582 ADAMTS9Q9P2N4 1935 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 LRRC3CA6NJW4 275 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 TSPAN2O60636 221 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 DDAH2O95865 285 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 CLRN1P58418 232 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 FAM3BP58499 235 aaPredicted RBP10.12□□□□□ -0.79
HDAC4-210ENST00000493582 ZP4Q12836 540 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 EXT1Q16394 746 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 SPIN3Q5JUX0 258 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 ZNF721Q8TF20 911 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 IL22RA2Q969J5 263 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 MS4A10Q96PG2 267 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 TMEM222Q9H0R3 208 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 SERINC1Q9NRX5 453 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 NAT8Q9UHE5 227 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 PIGLQ9Y2B2 252 aa10.12□□□□□ -0.79
HDAC4-210ENST00000493582 NCOA6Q14686 2063 aaPredicted RBP10.11□□□□□ -0.79
HDAC4-210ENST00000493582 LCATP04180 440 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 IGKV3-11P04433 115 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 OR10J1P30954 320 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 MTCP1P56278 107 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 TFF2Q03403 129 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 TGIF2LYQ8IUE0 185 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.11□□□□□ -0.79
HDAC4-210ENST00000493582 MRPL13Q9BYD1 178 aaKnown RBP10.11□□□□□ -0.79
HDAC4-210ENST00000493582 Q9N2K0 584 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 TMEM131Q92545 1883 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 CNN1P51911 297 aaKnown RBP10.11□□□□□ -0.79
HDAC4-210ENST00000493582 ZNF133P52736 654 aaPredicted RBP10.11□□□□□ -0.79
HDAC4-210ENST00000493582 HERV-K104P61576 105 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 RPL23P62829 140 aaKnown RBP10.11□□□□□ -0.79
HDAC4-210ENST00000493582 TMEM267Q0VDI3 215 aaPredicted RBP10.11□□□□□ -0.79
HDAC4-210ENST00000493582 SMAD4Q13485 552 aaKnown RBP10.11□□□□□ -0.79
HDAC4-210ENST00000493582 SHHQ15465 462 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 ACTL10Q5JWF8 245 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 OR5T1Q8NG75 326 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 POC1BQ8TC44 478 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 MOB3AQ96BX8 217 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 SIGLEC12Q96PQ1 595 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 HIPK2Q9H2X6 1198 aa10.11□□□□□ -0.79
HDAC4-210ENST00000493582 CCDC85CA6NKD9 419 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 HMGB3O15347 200 aaKnown RBP10.1□□□□□ -0.79
HDAC4-210ENST00000493582 TM4SF4P48230 202 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 PAX9P55771 341 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 C1orf61Q13536 156 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 THEM4Q5T1C6 240 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 DPPA3Q6W0C5 159 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 CCDC71LQ8N9Z2 235 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 PLPPR1Q8TBJ4 325 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 NEK7Q8TDX7 302 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 OIT3Q8WWZ8 545 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 PARD6AQ9NPB6 346 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 B3GAT1Q9P2W7 334 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 OR2J2O76002 312 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 CD82P27701 267 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 GNRHRP30968 328 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 ZNF92Q03936 586 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 RUNX3Q13761 415 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 TESK1Q15569 626 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 PIGYQ3MUY2 71 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 TBC1D26Q86UD7 250 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 SELENOHQ8IZQ5 122 aaKnown RBP10.1□□□□□ -0.79
HDAC4-210ENST00000493582 OR2V1Q8NHB1 315 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 OR2J1Q9GZK6 312 aa10.1□□□□□ -0.79
HDAC4-210ENST00000493582 WWTR1Q9GZV5 400 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms