RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PRRC2CQ9Y520 2896 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-208ENST00000492980 IGKV1-6A0A0C4DH72 117 aa17.94■□□□□ 0.46
CCDC88B-208ENST00000492980 SLC34A2O95436 690 aa17.94■□□□□ 0.46
CCDC88B-208ENST00000492980 ERVK11-1P61568 191 aa17.94■□□□□ 0.46
CCDC88B-208ENST00000492980 PROCRQ9UNN8 238 aa17.94■□□□□ 0.46
CCDC88B-208ENST00000492980 POLDIP2Q9Y2S7 368 aa17.94■□□□□ 0.46
CCDC88B-208ENST00000492980 MBD3L4A6NDZ8 208 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 MBD3L3A6NE82 208 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 MBD3L5A6NJ08 208 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 GLI4P10075 376 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 GNRHRP30968 328 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 KCNJ3P48549 501 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 ZNF154Q13106 437 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 SNTB1Q13884 538 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 ZNF880Q6PDB4 577 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 LYZL2Q7Z4W2 148 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 MBD3L2Q8NHZ7 208 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 SHARPINQ9H0F6 387 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 FRYQ5TBA9 3013 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 CFAP47Q6ZTR5 3102 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 DEGS1O15121 323 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 PHF1O43189 567 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 KLK10O43240 276 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 TUSC2O75896 110 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 EIF2S3P41091 472 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 FOXRED2Q8IWF2 684 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 Q8IYB0 196 aa17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 ZNF71Q9NQZ8 489 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-208ENST00000492980 H0YL77 283 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 TEX46H3BTG2 121 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 H7C1Q1 480 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 MPPED1O15442 326 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 CTXN2P0C2S0 81 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 CECR9P0C854 216 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 PGA5P0DJD9 388 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 ZNF44P15621 663 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 NAAAQ02083 359 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 OR8G1Q15617 311 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 PAN3Q58A45 887 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 FAM185AQ8N0U4 392 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 LGI3Q8N145 548 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 TP53RKQ96S44 253 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 NRIP2Q9BQI9 281 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 ZFHX2Q9C0A1 2572 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 TPT1P13693 172 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 LDLRAD3Q86YD5 345 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 LHFPL5Q8TAF8 219 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 SECTM1Q8WVN6 248 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 SLC5A7Q9GZV3 580 aa17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 BARX1Q9HBU1 254 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-208ENST00000492980 IGKV1D-13A0A0B4J2D9 117 aa17.91■□□□□ 0.46
CCDC88B-208ENST00000492980 CDIPTO14735 213 aa17.91■□□□□ 0.46
CCDC88B-208ENST00000492980 DEDDO75618 318 aa17.91■□□□□ 0.46
CCDC88B-208ENST00000492980 IGLV1-44P01699 117 aa17.91■□□□□ 0.46
CCDC88B-208ENST00000492980 IGKV1-13P0DP09 117 aa17.91■□□□□ 0.46
CCDC88B-208ENST00000492980 LRRC20Q8TCA0 184 aa17.91■□□□□ 0.46
CCDC88B-208ENST00000492980 RIF1Q5UIP0 2472 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-208ENST00000492980 C3orf85A0A1B0GTC6 90 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 TMEM210A6NLX4 147 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 K7EM74 188 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 FGF2P09038 288 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 HKR1P10072 659 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 RND3P61587 244 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 HLA-DRB3P79483 266 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 P2RY6Q15077 328 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 PCSK4Q6UW60 755 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 HSD17B13Q7Z5P4 300 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 RBMXL3Q8N7X1 1067 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 ZNF565Q8N9K5 539 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 LRFN3Q9BTN0 628 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 OBP2BQ9NPH6 170 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 PURGQ9UJV8 347 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 TINAGQ9UJW2 476 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 INTS1Q8N201 2190 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 IGHV3-64DA0A0J9YX35 117 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 A8MXK9 166 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 MLNRO43193 412 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 RCC1P18754 421 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 ZNF818PQ6ZRF7 136 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 BHLHA15Q7RTS1 189 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 BAP18Q8IXM2 172 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 OR8G5Q8NG78 346 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 TMEM100Q9NV29 134 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 FBXO9Q9UK97 447 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 SESN1Q9Y6P5 492 aa17.9■□□□□ 0.46
CCDC88B-208ENST00000492980 A0A1B0GW55 424 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 SIRPB1O00241 398 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 GPR31O00270 319 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 SLC33A1O00400 549 aaPredicted RBP17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 OR2H2O95918 312 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 GRPP07492 148 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 DUX4L2P0CJ85 424 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 DUX4L3P0CJ86 424 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 DUX4L4P0CJ87 422 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 DUX4L5P0CJ88 424 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 DUX4L6P0CJ89 424 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 DUX4L7P0CJ90 424 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 MDH2P40926 338 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 SMCO1Q147U7 214 aa17.89■□□□□ 0.45
CCDC88B-208ENST00000492980 TBC1D26Q86UD7 250 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms