RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 FCGR2CP31995 323 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 UCP2P55851 309 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 BAMBIQ13145 260 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 SLC9A3R2Q15599 337 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 THOC7Q6I9Y2 204 aaKnown RBP9.15□□□□□ -0.94
USP4-214ENST00000491791 SLC22A25Q6T423 547 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 HSD17B13Q7Z5P4 300 aaPredicted RBP9.15□□□□□ -0.94
USP4-214ENST00000491791 COMMD7Q86VX2 200 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 MED12LQ86YW9 2145 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 FAM58AQ8N1B3 248 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 CCDC71LQ8N9Z2 235 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 MSI2Q96DH6 328 aaKnown RBP9.15□□□□□ -0.94
USP4-214ENST00000491791 MARS2Q96GW9 593 aaKnown RBP9.15□□□□□ -0.94
USP4-214ENST00000491791 C18orf12Q96KH6 178 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 TAAR6Q96RI8 345 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 TRIB1Q96RU8 372 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 ARPC5LQ9BPX5 153 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 SHARPINQ9H0F6 387 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 TLNRD1Q9H1K6 362 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 WDR13Q9H1Z4 485 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 SEBOXQ9HB31 216 aaPredicted RBP9.15□□□□□ -0.94
USP4-214ENST00000491791 CDH20Q9HBT6 801 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 RDH8Q9NYR8 311 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 ZNF629Q9UEG4 869 aaPredicted RBP9.15□□□□□ -0.94
USP4-214ENST00000491791 PCDHB10Q9UN67 800 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 PIGBOS1A0A0B4J2F0 54 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 A0A1B0GW55 424 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 hCG_1807616A0A1W2PRN6 198 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 TAAR5O14804 337 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 LILRA1O75019 489 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 ADAP1O75689 374 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 PPYP01298 95 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 IFNA21P01568 189 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 DUX4L2P0CJ85 424 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 DUX4L3P0CJ86 424 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 DUX4L4P0CJ87 422 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 DUX4L5P0CJ88 424 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 DUX4L6P0CJ89 424 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 DUX4L7P0CJ90 424 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 PGA5P0DJD9 388 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 KITLGP21583 273 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 PIGPP57054 158 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 SRPXP78539 464 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 ZNF146Q15072 292 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 AANATQ16613 207 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 OR2T2Q6IF00 324 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 Q6P435 159 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 HAGHLQ6PII5 290 aaPredicted RBP9.14□□□□□ -0.95
USP4-214ENST00000491791 LIAT1Q6ZQX7 453 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 MOB1BQ7L9L4 216 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 PDZD9Q8IXQ8 264 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 SPERTQ8NA61 448 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 RTN4IP1Q8WWV3 396 aaPredicted RBP9.14□□□□□ -0.95
USP4-214ENST00000491791 STARD4Q96DR4 205 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 TMEM56Q96MV1 263 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 HS3ST6Q96QI5 342 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 CITED4Q96RK1 184 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 NRIP2Q9BQI9 281 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 CABLES2Q9BTV7 478 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 BCL2L14Q9BZR8 327 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 HES4Q9HCC6 221 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 ZNF71Q9NQZ8 489 aaPredicted RBP9.14□□□□□ -0.95
USP4-214ENST00000491791 SLC2A9Q9NRM0 540 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 CYTL1Q9NRR1 136 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 DUX4Q9UBX2 424 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 POLDIP2Q9Y2S7 368 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 AMDHD2Q9Y303 409 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 TMEM56-RWDD3S4R434 201 aa9.14□□□□□ -0.95
USP4-214ENST00000491791 BSNQ9UPA5 3926 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 TRAV24A0A0B4J272 114 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 C13orf42A0A1B0GVH6 325 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 DUXBA0A1W2PPF3 345 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 A8MXK9 166 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 FAM25EA8MYX2 175 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 FGF16O43320 207 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 WDR1O75083 606 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 WISP2O76076 250 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 KNG1P01042 644 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 RLN2P04090 185 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 TK1P04183 234 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 FGF2P09038 288 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 AADACP22760 399 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 CA6P23280 308 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 LMO1P25800 156 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 HERV-K104P61576 105 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 PSG7Q13046 419 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 ABCA11PQ4W5N1 156 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 PAN3Q58A45 887 aaKnown RBP9.13□□□□□ -0.95
USP4-214ENST00000491791 SPIN3Q5JUX0 258 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 MBNL2Q5VZF2 373 aaKnown RBP9.13□□□□□ -0.95
USP4-214ENST00000491791 ALKAL2Q6UX46 152 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 BEND4Q6ZU67 534 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 MYPOPQ86VE0 399 aaPredicted RBP9.13□□□□□ -0.95
USP4-214ENST00000491791 LGI3Q8N145 548 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 SUMF2Q8NBJ7 301 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 OR4A4PQ8NGN8 299 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 OR1S1Q8NH92 325 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 SLC25A40Q8TBP6 338 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 MRPL30Q8TCC3 161 aaKnown RBP9.13□□□□□ -0.95
USP4-214ENST00000491791 GLYATL2Q8WU03 294 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms