RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ZFP82Q8N141 532 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 ZNF664Q8N3J9 261 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 C17orf78Q8N4C9 275 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 OR8A1Q8NGG7 326 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 OR6K3Q8NGY3 331 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 RBPMSQ93062 196 aaKnown RBP1.07□□□□□ -2.24
CPSF3-205ENST00000489629 CCDC127Q96BQ5 260 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 TMEM56Q96MV1 263 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 OR2M4Q96R27 311 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 OR2V2Q96R30 315 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 TM2D3Q9BRN9 247 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 LLPHQ9BRT6 129 aaKnown RBP1.07□□□□□ -2.24
CPSF3-205ENST00000489629 THTPAQ9BU02 230 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 TAPBPLQ9BX59 468 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 SUCNR1Q9BXA5 334 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 UPF3BQ9BZI7 483 aaKnown RBP1.07□□□□□ -2.24
CPSF3-205ENST00000489629 SLC19A3Q9BZV2 496 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 SLC25A31Q9H0C2 315 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 SDHAF3Q9NRP4 125 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 INIPQ9NRY2 104 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 RBM22Q9NW64 420 aaKnown RBP eCLIP1.07□□□□□ -2.24
CPSF3-205ENST00000489629 CHMP5Q9NZZ3 219 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 CD300AQ9UGN4 299 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 BTRCQ9Y297 605 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 TBL2Q9Y4P3 447 aaKnown RBP1.07□□□□□ -2.24
CPSF3-205ENST00000489629 FADS3Q9Y5Q0 445 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 GMEB1Q9Y692 573 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 USH1CQ9Y6N9 552 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 NACADO15069 1562 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 MAP3K19Q56UN5 1328 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 LCTP09848 1927 aa1.07□□□□□ -2.24
CPSF3-205ENST00000489629 DOCK6Q96HP0 2047 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 PLXNB1O43157 2135 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 TRAV8-3A0A0A6YYJ7 113 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 ERICH2A1L162 156 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 GMNCA6NCL1 334 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 A8MWP4 228 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 SLC37A4O43826 429 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 COX7A2P2O60397 106 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 SOD3P08294 240 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 LIMS3P0CW19 117 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 LIMS4P0CW20 117 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 PSMB6P28072 239 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 KDELR2P33947 212 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 SPAM1P38567 509 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 CCL23P55773 120 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 UBE2G2P60604 165 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 DSTNP60981 165 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 HBG1P69891 147 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 HBG2P69892 147 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 FMODQ06828 376 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 IHHQ14623 411 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 OR4D1Q15615 310 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 USF2Q15853 346 aaPredicted RBP1.06□□□□□ -2.24
CPSF3-205ENST00000489629 DEFB134Q4QY38 66 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 ATP6AP1LQ52LC2 224 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 LDLRAD2Q5SZI1 272 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 HES3Q5TGS1 186 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 PDPK2PQ6A1A2 396 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 ZNF660Q6AZW8 331 aaPredicted RBP1.06□□□□□ -2.24
CPSF3-205ENST00000489629 LAIR2Q6ISS4 152 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 DGAT2L6Q6ZPD8 337 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 CLEC20AQ6ZU45 233 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 USP50Q70EL3 339 aaPredicted RBP1.06□□□□□ -2.24
CPSF3-205ENST00000489629 DPPA2Q7Z7J5 298 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 LRRC6Q86X45 466 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 BLIDQ8IZY5 108 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 ZNF738Q8NE65 137 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 FAM45AQ8TCE6 357 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 NELFBQ8WX92 580 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 MRAP2Q96G30 205 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 PRSS27Q9BQR3 290 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 MED10Q9BTT4 135 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 ULBP1Q9BZM6 244 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 TSGA10Q9BZW7 698 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 OR51E2Q9H255 320 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 RHOFQ9HBH0 211 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 TAC3Q9UHF0 121 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 FBXL3Q9UKT7 428 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 SLC22A14Q9Y267 594 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 ZBED9Q6R2W3 1325 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 NRCAMQ92823 1304 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 NOS1P29475 1434 aa1.06□□□□□ -2.24
CPSF3-205ENST00000489629 MYO15BQ96JP2 1530 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 TRPM6Q9BX84 2022 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 DNMT1P26358 1616 aaKnown RBP1.05□□□□□ -2.24
CPSF3-205ENST00000489629 IGHV3-43A0A0B4J1X8 118 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 PGPA6NDG6 321 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 FABP12A6NFH5 140 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 H3BQ85 93 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 UPK2O00526 184 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 FABP7O15540 132 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 FGF16O43320 207 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 CALUO43852 315 aaPredicted RBP1.05□□□□□ -2.24
CPSF3-205ENST00000489629 ASS1P00966 412 aaKnown RBP1.05□□□□□ -2.24
CPSF3-205ENST00000489629 IGKV1D-33P01593 117 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 IGKV1-33P01594 117 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 SPNP16150 400 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 S100A2P29034 98 aa1.05□□□□□ -2.24
CPSF3-205ENST00000489629 RPA3P35244 121 aaPredicted RBP1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms