RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 A0A1W2PPQ1 181 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 SPRY1O43609 319 aaPredicted RBP9.2□□□□□ -0.94
CCDC171-208ENST00000486641 HPRT1P00492 218 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 IGLV3-1P01715 115 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 SELEP16581 610 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 MSX1P28360 303 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 GNG10P50151 68 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 PAX9P55771 341 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 FAM3BP58499 235 aaPredicted RBP9.2□□□□□ -0.94
CCDC171-208ENST00000486641 ID3Q02535 119 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 EIF3IQ13347 325 aaKnown RBP9.2□□□□□ -0.94
CCDC171-208ENST00000486641 RTP5Q14D33 572 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 TMEM241Q24JQ0 296 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 CENPVQ7Z7K6 275 aaPredicted RBP9.2□□□□□ -0.94
CCDC171-208ENST00000486641 UEVLDQ8IX04 471 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 OR2V1Q8NHB1 315 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 PLPPR1Q8TBJ4 325 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 GPHA2Q96T91 129 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 SMIM7Q9BQ49 75 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 RIMS4Q9H426 269 aaPredicted RBP9.2□□□□□ -0.94
CCDC171-208ENST00000486641 LPAR2Q9HBW0 351 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 UBE2J1Q9Y385 318 aaPredicted RBP9.2□□□□□ -0.94
CCDC171-208ENST00000486641 RTTNQ86VV8 2226 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 PTPRSQ13332 1948 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 TNFRSF10CO14798 259 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 OR10J1P30954 320 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 BRS3P32247 399 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 EFNA3P52797 238 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 MTCP1P56278 107 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 MRPS34P82930 218 aaKnown RBP9.2□□□□□ -0.94
CCDC171-208ENST00000486641 IL24Q13007 206 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 SHHQ15465 462 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 EXT1Q16394 746 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 BSXQ3C1V8 233 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 MBD3L1Q8WWY6 194 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 TMEM234Q8WY98 164 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 TMEM56Q96MV1 263 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 OR5B12Q96R08 314 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 WWTR1Q9GZV5 400 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 RBKSQ9H477 322 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 Q9N2K0 584 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 VDAC3Q9Y277 283 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 TMEM56-RWDD3S4R434 201 aa9.2□□□□□ -0.94
CCDC171-208ENST00000486641 CHD3Q12873 2000 aaKnown RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 LIPT2A6NK58 231 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 ZNF705FA8MVS1 300 aaPredicted RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 F5H5K5 113 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 H7BYZ3 331 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 DHRS3O75911 302 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 OPN1LWP04000 364 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 ZNF705DP0CH99 300 aaPredicted RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 ZNF705BP0CI00 300 aaPredicted RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 HNRNPA2B1P22626 353 aaKnown RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 GNRHRP30968 328 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 HERV-K104P61576 105 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 RPL23P62829 140 aaKnown RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 HHEXQ03014 270 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 TFF2Q03403 129 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 TRA2AQ13595 282 aaKnown RBP eCLIP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 TMEM31Q5JXX7 168 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 SLC25A24Q6NUK1 477 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 SLC25A47Q6Q0C1 308 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 Q6ZPA2 131 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 TBC1D26Q86UD7 250 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 SPPL3Q8TCT6 385 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 NAT6Q93015 286 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 ZNF845Q96IR2 970 aaPredicted RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 ZNF385AQ96PM9 386 aaKnown RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 TBX15Q96SF7 602 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 SPIN2AQ99865 258 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 SPIN2BQ9BPZ2 258 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 OR6C3Q9NZP0 311 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 TMEM150CB9EJG8 249 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 NUPR1O60356 82 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 PPYP01298 95 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 IFNA5P01569 189 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 CNN1P51911 297 aaKnown RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 GRB2P62993 217 aaKnown RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 SRPXP78539 464 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 ACOT6Q3I5F7 207 aaPredicted RBP9.19□□□□□ -0.94
CCDC171-208ENST00000486641 TDRG1Q3Y452 100 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 CYP2G1PQ6ZSU1 146 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 MRGPRGQ86SM5 289 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 TMEM256Q8N2U0 113 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 PP6455Q8WZ26 134 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 ZNF160Q9HCG1 818 aa9.19□□□□□ -0.94
CCDC171-208ENST00000486641 KIAA2026Q5HYC2 2103 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 RP1P56715 2156 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 A0A1B0GUS0 222 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 LRRC3CA6NJW4 275 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 H3BP45 60 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 EFNA2O43921 213 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 HRASP01112 189 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 IGHG1P01857 330 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 COL9A1P20849 921 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 KIR2DL1P43626 348 aaPredicted RBP9.18□□□□□ -0.94
CCDC171-208ENST00000486641 TLE1Q04724 770 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 PDCD1Q15116 288 aa9.18□□□□□ -0.94
CCDC171-208ENST00000486641 TMEM196Q5HYL7 178 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms