RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 GLRX2Q9NS18 164 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 TP53TG5Q9Y2B4 290 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 UBE2J1Q9Y385 318 aaPredicted RBP11.51□□□□□ -0.57
USP40-214ENST00000483519 TRBV24-1A0A075B6N3 115 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 TRAV1-1A0A0B4J248 108 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 ZNF814B7Z6K7 855 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 PROB1E7EW31 1015 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 OPN1MWP04001 364 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 OPN1MW2P0DN77 364 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 OPN1MW3P0DN78 364 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 CXCL12P48061 93 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 RAB11AP62491 216 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 JOSD1Q15040 202 aaPredicted RBP11.51□□□□□ -0.57
USP40-214ENST00000483519 C4orf17Q53FE4 359 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 TMEM183AQ8IXX5 376 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 DYRK2Q92630 601 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 SPTSSAQ969W0 71 aa11.51□□□□□ -0.57
USP40-214ENST00000483519 XIRP2A4UGR9 3374 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 USP34Q70CQ2 3546 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 A0A1B0GU03 582 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 AQP7P3A6NL99 342 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 CST7O76096 145 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 PPYP01298 95 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 OTX1P32242 354 aaPredicted RBP11.5□□□□□ -0.57
USP40-214ENST00000483519 CLDN17P56750 224 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 RUNX1Q01196 453 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 SHISA6Q6ZSJ9 500 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 IL22RA1Q8N6P7 574 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 RNASEH2CQ8TDP1 164 aaKnown RBP11.5□□□□□ -0.57
USP40-214ENST00000483519 TMEM56Q96MV1 263 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 ATP5SQ99766 215 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 TMEM56-RWDD3S4R434 201 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 MYO7BQ6PIF6 2116 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 LOC102725191A0A1B0GVB3 256 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 DLL1O00548 723 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 PGA5P0DJD9 388 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 FUT3P21217 361 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 CEACAM6P40199 344 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 TAS2R30P59541 319 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 ENDOGQ14249 297 aaKnown RBP11.5□□□□□ -0.57
USP40-214ENST00000483519 FAM90A2PQ658T7 463 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 ZNF385CQ66K41 422 aaPredicted RBP11.5□□□□□ -0.57
USP40-214ENST00000483519 Q6ZS52 159 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 BEND4Q6ZU67 534 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 DTX1Q86Y01 620 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 H1FOOQ8IZA3 346 aaPredicted RBP11.5□□□□□ -0.57
USP40-214ENST00000483519 TMEM217Q8N7C4 229 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 RNF138Q8WVD3 245 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 RAB24Q969Q5 203 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 CABLES2Q9BTV7 478 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 MAGT1Q9H0U3 335 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 ZNF581Q9P0T4 197 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 GNG13Q9P2W3 67 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 SEC16AO15027 2179 aa11.5□□□□□ -0.57
USP40-214ENST00000483519 A0A1W2PPC4 97 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 DUXBA0A1W2PPF3 345 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 LAMTOR5O43504 91 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 OR8G1Q15617 311 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 USF2Q15853 346 aaPredicted RBP11.49□□□□□ -0.57
USP40-214ENST00000483519 C20orf196Q8IYI0 205 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 MISP3Q96FF7 219 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 GPR87Q9BY21 358 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 CTDSP1Q9GZU7 261 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 METTL7AQ9H8H3 244 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 CALHM2Q9HA72 323 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 CISD1Q9NZ45 108 aaKnown RBP11.49□□□□□ -0.57
USP40-214ENST00000483519 EYSQ5T1H1 3165 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 IGLV3-32A0A0A0MS00 114 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 PHOX2AO14813 284 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 ADAM20O43506 726 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 DFFBO76075 338 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 IL24Q13007 206 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 MALLQ13021 153 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 EXT1Q16394 746 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 C10orf128Q5T292 105 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 OSR2Q8N2R0 312 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 BORCS8Q96FH0 119 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 SMOC1Q9H4F8 434 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 PLEK2Q9NYT0 353 aa11.49□□□□□ -0.57
USP40-214ENST00000483519 KNL1Q8NG31 2342 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 A8MWP6 167 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 BCL2P10415 239 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 EPHA1P21709 976 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 HOXA6P31267 233 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 HIST1H3AP68431 136 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 SHBQ15464 509 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 PIGYQ3MUY2 71 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 CXorf66Q5JRM2 361 aaPredicted RBP11.48□□□□□ -0.57
USP40-214ENST00000483519 TMEM211Q6ICI0 200 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 TCEAL6Q6IPX3 200 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 ASCL4Q6XD76 172 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 TBC1D26Q86UD7 250 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 TMEM105Q8N8V8 129 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 TSTD1Q8NFU3 115 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 CDH20Q9HBT6 801 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 SPTBN5Q9NRC6 3674 aaKnown RBP11.48□□□□□ -0.57
USP40-214ENST00000483519 CLEC18AA5D8T8 446 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 ATXN7O15265 892 aaPredicted RBP11.48□□□□□ -0.57
USP40-214ENST00000483519 PDCD6O75340 191 aa11.48□□□□□ -0.57
USP40-214ENST00000483519 FKBP2P26885 142 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms