RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SIGLECL1Q8N7X8 197 aa11.83□□□□□ -0.51
USP42-206ENST00000479544 CTHRC1Q96CG8 243 aa11.83□□□□□ -0.51
USP42-206ENST00000479544 SLC7A10Q9NS82 523 aa11.83□□□□□ -0.51
USP42-206ENST00000479544 GJE1A6NN92 205 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 ZNF732B4DXR9 585 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 TGFBR3LH3BV60 316 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 LYPD3O95274 346 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 ZNF32P17041 273 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 FAM3BP58499 235 aaPredicted RBP11.83□□□□□ -0.52
USP42-206ENST00000479544 FOXK1P85037 733 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 RAB31Q13636 194 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 KHDC3LQ587J8 217 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 RFESDQ8TAC1 157 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 SHDQ96IW2 340 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 GPX7Q96SL4 187 aaPredicted RBP11.83□□□□□ -0.52
USP42-206ENST00000479544 VAMP8Q9BV40 100 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 CDH20Q9HBT6 801 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 ZNF107Q9UII5 783 aaPredicted RBP11.83□□□□□ -0.52
USP42-206ENST00000479544 ZNF407Q9C0G0 2248 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 ZNF729A6NN14 1252 aaPredicted RBP11.83□□□□□ -0.52
USP42-206ENST00000479544 PLA2G5P39877 138 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 UBE2NP61088 152 aaKnown RBP11.83□□□□□ -0.52
USP42-206ENST00000479544 VAX1Q5SQQ9 334 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 DPPA3Q6W0C5 159 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 UCN2Q96RP3 112 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 INTS1Q8N201 2190 aaKnown RBP11.83□□□□□ -0.52
USP42-206ENST00000479544 TNFSF14O43557 240 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 SLC25A6P12236 298 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 SPNS3Q6ZMD2 512 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 POC1AQ8NBT0 407 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 OR2T10Q8NGZ9 312 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 NTNG2Q96CW9 530 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 MRGPRX4Q96LA9 322 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 G6PC2Q9NQR9 355 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 CACNA1BQ00975 2339 aa11.83□□□□□ -0.52
USP42-206ENST00000479544 KIAA1324LA8MWY0 1029 aaPredicted RBP11.82□□□□□ -0.52
USP42-206ENST00000479544 ZNF735P0CB33 412 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 ABI3Q9P2A4 366 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 SCN8AQ9UQD0 1980 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 A0A0C4DFX4 3053 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 C9JQL5 133 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 K7EQS6 105 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 PDCD6O75340 191 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 OPN1MWP04001 364 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 OPN1MW2P0DN77 364 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 OPN1MW3P0DN78 364 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 TMEM50BP56557 158 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 RPS23P62266 143 aaKnown RBP11.82□□□□□ -0.52
USP42-206ENST00000479544 RPS19BP1Q86WX3 136 aaKnown RBP11.82□□□□□ -0.52
USP42-206ENST00000479544 PCGF1Q9BSM1 259 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 ACTR3CQ9C0K3 210 aaPredicted RBP11.82□□□□□ -0.52
USP42-206ENST00000479544 FKBP11Q9NYL4 201 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 MTCH1Q9NZJ7 389 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 NDUFA2O43678 99 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 GAPDHP04406 335 aaKnown RBP11.82□□□□□ -0.52
USP42-206ENST00000479544 H2BFWTQ7Z2G1 175 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 RNF144BQ7Z419 303 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 LRFN3Q9BTN0 628 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 PITPNC1Q9UKF7 332 aa11.82□□□□□ -0.52
USP42-206ENST00000479544 PPP1CBP62140 327 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 CATR1Q13166 79 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 FFAR4Q5NUL3 377 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 PHYHD1Q5SRE7 291 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 SSX7Q7RTT5 188 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 SLC25A43Q8WUT9 341 aaPredicted RBP11.81□□□□□ -0.52
USP42-206ENST00000479544 DOCK10Q96BY6 2186 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 PLXND1Q9Y4D7 1925 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 F6UZH7 168 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 NPIPB9F8W1W9 429 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 ACTL6BO94805 426 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 NDUFB7P17568 137 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 COX5AP20674 150 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 MRPL49Q13405 166 aaKnown RBP11.81□□□□□ -0.52
USP42-206ENST00000479544 SMAD4Q13485 552 aaKnown RBP11.81□□□□□ -0.52
USP42-206ENST00000479544 LHFPL2Q6ZUX7 228 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 CLCF1Q9UBD9 225 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 ELOA3CA0A087WX78 387 aaPredicted RBP11.81□□□□□ -0.52
USP42-206ENST00000479544 LIPT2A6NK58 231 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 APOA2P02652 100 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 DANCRP0C864 163 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 FSTP19883 344 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 FCARP24071 287 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 CEBPEQ15744 281 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 GPR27Q9NS67 375 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 KIAA1456Q9P272 454 aa11.81□□□□□ -0.52
USP42-206ENST00000479544 A0A1W2PPC4 97 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 C5orf52A6NGY3 159 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 DXOO77932 396 aaKnown RBP11.8□□□□□ -0.52
USP42-206ENST00000479544 SMIM10L1P0DMW3 83 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 EGR1P18146 543 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 SSR4P51571 173 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 TCL1AP56279 114 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 SLC38A11Q08AI6 406 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 IFI44Q8TCB0 444 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 VN1R17PQ8TDU5 208 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 SMIM10Q96HG1 83 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 CCDC74BQ96LY2 380 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 TMEM68Q96MH6 324 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 TBX15Q96SF7 602 aa11.8□□□□□ -0.52
USP42-206ENST00000479544 ZNF586Q9NXT0 402 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms