RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 S100A14Q9HCY8 104 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 RPL36Q9Y3U8 105 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 KBTBD11-OT1A0A1B0GTJ5 212 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 WBP4O75554 376 aaKnown RBP15□□□□□ -0.01
CCDC88B-206ENST00000473405 OR2F2O95006 317 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 BRS3P32247 399 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 GBX2P52951 348 aaPredicted RBP15□□□□□ -0.01
CCDC88B-206ENST00000473405 CD83Q01151 205 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 TCTEX1D4Q5JR98 221 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 PQLC1Q8N2U9 271 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 OR13A1Q8NGR1 328 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 CNIH3Q8TBE1 160 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 SLC25A33Q9BSK2 321 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 OR6C3Q9NZP0 311 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 KIF25Q9UIL4 384 aa15□□□□□ -0.01
CCDC88B-206ENST00000473405 XPNPEP2O43895 674 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 RAB3AP20336 220 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 CEACAM3P40198 252 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 GLP1RP43220 463 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 SOX2P48431 317 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 PAX5Q02548 391 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 PIGYQ3MUY2 71 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 PAN3Q58A45 887 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 Q6ZPA2 131 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 Q8NFD4 153 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 OR5AU1Q8NGC0 362 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 OR10K1Q8NGX5 313 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 HAVCR2Q8TDQ0 301 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 TNFAIP8L1Q8WVP5 186 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 CREB3L1Q96BA8 519 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 AKR1E2Q96JD6 320 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 RBM14Q96PK6 669 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 NR1H4Q96RI1 486 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 LINC00574Q9H8X3 128 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 FGF20Q9NP95 211 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 TAS2R4Q9NYW5 299 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 CALYQ9NYX4 217 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 ZNF581Q9P0T4 197 aa14.99□□□□□ -0.01
CCDC88B-206ENST00000473405 MEIKINA0A087WXM9 373 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 TOR1AO14656 332 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 NFYBP25208 207 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 OR3A4PP47883 348 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 ETV1P50549 477 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 ARHGDIBP52566 201 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 RBM39Q14498 530 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 IL13RA2Q14627 380 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 ABCA11PQ4W5N1 156 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 KLHL22Q53GT1 634 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 RSBN1Q5VWQ0 802 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 ASCL4Q6XD76 172 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 C10orf67Q8IYJ2 551 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 PLPPR1Q8TBJ4 325 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 STMN2Q93045 179 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 CPNE2Q96FN4 548 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 NCOR1P1Q9H4R4 102 aa14.98□□□□□ -0.01
CCDC88B-206ENST00000473405 A0A1W2PRX2 142 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 SH2D7A6NKC9 451 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 OOSP1A8MZH6 123 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 H3BUI4 141 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 LPLP06858 475 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 PRRX1P54821 245 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 CCDC58Q4VC31 144 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 SATL1Q86VE3 508 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 OR9G1Q8NH87 305 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 GPR148Q8TDV2 347 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 LEAP2Q969E1 77 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 TMEM106AQ96A25 262 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 GPER1Q99527 375 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 FAM192AQ9GZU8 254 aa14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 SIRT4Q9Y6E7 314 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-206ENST00000473405 MAGEB3O15480 346 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 IL1AP01583 271 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 IGHV3-7P01780 117 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 RSU1Q15404 277 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 OR2G6Q5TZ20 316 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 CCDC144NLQ6NUI1 221 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 RPL22L1Q6P5R6 122 aaKnown RBP14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 C10orf99Q6UWK7 81 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 REC114Q7Z4M0 266 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 CAPSLQ8WWF8 208 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 PHF21AQ96BD5 680 aa14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 SMPD3Q9NY59 655 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-206ENST00000473405 A0A1W2PPI3 338 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A18PA6NE21 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A16PA6NEW6 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A20PA6NIJ5 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A9PA6NNJ1 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A12PA8MX19 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A5PA8MXJ8 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 NPIPB11E5RHQ5 1161 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 J3QR06 171 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 CDRT1O95170 752 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 CD2P06729 351 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A15PP0C7V4 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A13PP0C7W8 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A14PP0C7W9 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM90A24PP0C7X0 464 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 SSTR5P35346 364 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 MNDAP41218 407 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 NHLRC3Q5JS37 347 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms