RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 SMPD3Q9NY59 655 aaPredicted RBP13.33□□□□□ -0.28
USP40-212ENST00000473191 KIF25Q9UIL4 384 aa13.33□□□□□ -0.28
USP40-212ENST00000473191 PITPNC1Q9UKF7 332 aa13.33□□□□□ -0.28
USP40-212ENST00000473191 NOTCH1P46531 2555 aa13.33□□□□□ -0.28
USP40-212ENST00000473191 PLXNB1O43157 2135 aa13.33□□□□□ -0.28
USP40-212ENST00000473191 A0A1W2PP11 408 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 BUB1B-PAK6H3BSN5 160 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 NFYBP25208 207 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 GLP1RP43220 463 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 MTNR1BP49286 362 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 RBM39Q14498 530 aaKnown RBP13.32□□□□□ -0.28
USP40-212ENST00000473191 LTC4SQ16873 150 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 HLA-DRB5Q30154 266 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 KLHL22Q53GT1 634 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 TCTEX1D4Q5JR98 221 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 ELP2Q6IA86 826 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 FAM53AQ6NSI3 398 aaPredicted RBP13.32□□□□□ -0.28
USP40-212ENST00000473191 ZFP41Q8N8Y5 198 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 PXT1Q8NFP0 134 aa13.32□□□□□ -0.28
USP40-212ENST00000473191 A0A087X0M5 115 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 KBTBD11-OT1A0A1B0GTJ5 212 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 A0A1B0GX30 115 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 EBAG9O00559 213 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 HTR3BO95264 441 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 VDAC2P45880 294 aaPredicted RBP13.31□□□□□ -0.28
USP40-212ENST00000473191 MRPL28Q13084 256 aaKnown RBP13.31□□□□□ -0.28
USP40-212ENST00000473191 ABCA11PQ4W5N1 156 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 PAN3Q58A45 887 aaKnown RBP13.31□□□□□ -0.28
USP40-212ENST00000473191 OXLD1Q5BKU9 147 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 TPTE2P1Q5T6R2 138 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 RSBN1Q5VWQ0 802 aaPredicted RBP13.31□□□□□ -0.28
USP40-212ENST00000473191 OR52W1Q6IF63 320 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 RPL22L1Q6P5R6 122 aaKnown RBP13.31□□□□□ -0.28
USP40-212ENST00000473191 RTN4RL2Q86UN3 420 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 CHST4Q8NCG5 386 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 OR4D6Q8NGJ1 314 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 RFESDQ8TAC1 157 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 ZNF596Q8TC21 504 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 MRGPRDQ8TDS7 321 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 TMEM106AQ96A25 262 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 RBMXL1Q96E39 390 aaKnown RBP13.31□□□□□ -0.28
USP40-212ENST00000473191 GPER1Q99527 375 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 SLC25A33Q9BSK2 321 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 RHOFQ9HBH0 211 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 PCDHGB5Q9Y5G0 923 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 TGP01266 2768 aa13.31□□□□□ -0.28
USP40-212ENST00000473191 MEIKINA0A087WXM9 373 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 A0A1W2PPE3 182 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 A0A1W2PRX2 142 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 FUOMA2VDF0 154 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 ZNF729A6NN14 1252 aaPredicted RBP13.3□□□□□ -0.28
USP40-212ENST00000473191 LEUTXA8MZ59 168 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 OGG1O15527 345 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 LPLP06858 475 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 SSTR5P35346 364 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 ARSJQ5FYB0 599 aaPredicted RBP13.3□□□□□ -0.28
USP40-212ENST00000473191 LAIR2Q6ISS4 152 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 ASCL4Q6XD76 172 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 ZNF555Q8NEP9 628 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 Q8NFD4 153 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 GPR148Q8TDV2 347 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 STMN2Q93045 179 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 CALYQ9NYX4 217 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 ING4Q9UNL4 249 aa13.3□□□□□ -0.28
USP40-212ENST00000473191 DNAH3Q8TD57 4116 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 TOR1AO14656 332 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 GNG10P50151 68 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 RPS11P62280 158 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP40-212ENST00000473191 RSU1Q15404 277 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 DDI2Q5TDH0 399 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 NDUFA11Q86Y39 141 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 C10orf67Q8IYJ2 551 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 ZNF485Q8NCK3 441 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 OR5AU1Q8NGC0 362 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 UBALD1Q8TB05 177 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 CYGBQ8WWM9 190 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 R3HDM4Q96D70 268 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 OR6C3Q9NZP0 311 aa13.29□□□□□ -0.28
USP40-212ENST00000473191 TRAV8-7A0A075B6U6 113 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 A0A1W2PPK0 400 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 J3QR06 171 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 GEMIN2O14893 280 aaKnown RBP13.28□□□□□ -0.28
USP40-212ENST00000473191 PEX14O75381 377 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 GNAO1P09471 354 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 IGFBP3P17936 291 aaPredicted RBP13.28□□□□□ -0.28
USP40-212ENST00000473191 SERPINA2P20848 420 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 DCKP27707 260 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 ADARB1P78563 741 aaKnown RBP13.28□□□□□ -0.28
USP40-212ENST00000473191 CD83Q01151 205 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 IL13RA2Q14627 380 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 CCDC58Q4VC31 144 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 KPRPQ5T749 579 aaPredicted RBP13.28□□□□□ -0.28
USP40-212ENST00000473191 SUMF2Q8NBJ7 301 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 GGHQ92820 318 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 GHSRQ92847 366 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 SMIM19Q96E16 107 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 PGLYRP3Q96LB9 341 aa13.28□□□□□ -0.28
USP40-212ENST00000473191 RBM14Q96PK6 669 aaKnown RBP13.28□□□□□ -0.28
USP40-212ENST00000473191 MYCBPQ99417 103 aaPredicted RBP13.28□□□□□ -0.28
USP40-212ENST00000473191 LIN7BQ9HAP6 207 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms