RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 KIF25Q9UIL4 384 aa12.62□□□□□ -0.39
CCDC88B-205ENST00000472524 EXOSC1Q9Y3B2 195 aaKnown RBP12.62□□□□□ -0.39
CCDC88B-205ENST00000472524 SIRT4Q9Y6E7 314 aaPredicted RBP12.62□□□□□ -0.39
CCDC88B-205ENST00000472524 NOTCH3Q9UM47 2321 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 MEIKINA0A087WXM9 373 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 TRAV24A0A0B4J272 114 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 ZNF729A6NN14 1252 aaPredicted RBP12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 TOR1AO14656 332 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 CDRT1O95170 752 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 LALBAP00709 142 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 PRB2P02812 416 aaPredicted RBP12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 CD34P28906 385 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 VDAC2P45880 294 aaPredicted RBP12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 BLCAPP62952 87 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 BDH1Q02338 343 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 RBM39Q14498 530 aaKnown RBP12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 IL13RA2Q14627 380 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 RCN1Q15293 331 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 C17orf58Q2M2W7 97 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 BEAN1Q3B7T3 259 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 NSUN5P1Q3KNT7 163 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 DDI2Q5TDH0 399 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 TTC23Q5W5X9 447 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 ZFP41Q8N8Y5 198 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 SETD9Q8NE22 299 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 OR51T1Q8NGJ9 327 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 SMIM19Q96E16 107 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 CHCHD3Q9NX63 227 aaKnown RBP12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 ING4Q9UNL4 249 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 DIMT1Q9UNQ2 313 aaKnown RBP12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 ZNF281Q9Y2X9 895 aa12.61□□□□□ -0.39
CCDC88B-205ENST00000472524 FAM90A22PA8MWA6 464 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 LEUTXA8MZ59 168 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 H3BUI4 141 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 OGG1O15527 345 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 IGLV1-47P01700 117 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 CD28P10747 220 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 ARHGDIBP52566 201 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 MED21Q13503 144 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 LTC4SQ16873 150 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 HLA-DRB5Q30154 266 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 UTF1Q5T230 341 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 DHRSXQ8N5I4 330 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 OR13A1Q8NGR1 328 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 PLPPR1Q8TBJ4 325 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 CAPSLQ8WWF8 208 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 TMEM80Q96HE8 168 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 TMEM138Q9NPI0 162 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 BABAM2Q9NXR7 383 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 CALYQ9NYX4 217 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 ZNF581Q9P0T4 197 aa12.6□□□□□ -0.39
CCDC88B-205ENST00000472524 KBTBD11-OT1A0A1B0GTJ5 212 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 BUB1B-PAK6H3BSN5 160 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 IGHV3-7P01780 117 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 OPN1MWP04001 364 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 ALDOBP05062 364 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 OPN1MW2P0DN77 364 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 OPN1MW3P0DN78 364 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 SERPINA2P20848 420 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 BDKRB2P30411 391 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 BRS3P32247 399 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 ZNF93P35789 620 aaPredicted RBP12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 CEACAM3P40198 252 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 PRRX1P54821 245 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 ADARB1P78563 741 aaKnown RBP12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 FBLN7Q53RD9 439 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 TPTE2P1Q5T6R2 138 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 PACRGLQ8N7B6 248 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 OR52N1Q8NH53 320 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 GHSRQ92847 366 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 LEAP2Q969E1 77 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 KIRREL1Q96J84 757 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 BARHL1Q9BZE3 327 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 METTL9Q9H1A3 318 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 C8orf4Q9NR00 106 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 ST3GAL6Q9Y274 331 aa12.59□□□□□ -0.39
CCDC88B-205ENST00000472524 A0A087X0M5 115 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 PNMA8CA0A1B0GUJ8 204 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 A0A1B0GX30 115 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 OR7C1O76099 320 aaPredicted RBP12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 CSTBP04080 98 aaKnown RBP12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 C21orf33P30042 268 aaPredicted RBP12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 RIPK1Q13546 671 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 KPRPQ5T749 579 aaPredicted RBP12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 SAMD5Q5TGI4 173 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 RSBN1Q5VWQ0 802 aaPredicted RBP12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 ASCL4Q6XD76 172 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 OSR2Q8N2R0 312 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 ZNF565Q8N9K5 539 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 SUMF2Q8NBJ7 301 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 Q8NFD4 153 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 MRGPRDQ8TDS7 321 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 GGHQ92820 318 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 CREB3L1Q96BA8 519 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 S100A13Q99584 98 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 SLC25A33Q9BSK2 321 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 DPCDQ9BVM2 203 aaPredicted RBP12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 WNT10AQ9GZT5 417 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 IDI2-AS1Q9NZ38 188 aa12.58□□□□□ -0.4
CCDC88B-205ENST00000472524 TRAV39A0A0B4J263 110 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms