RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 KBTBD11-OT1A0A1B0GTJ5 212 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 A0A1B0GX30 115 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 ZNF729A6NN14 1252 aaPredicted RBP16.61■□□□□ 0.25
SDC1-205ENST00000447124 ADARB2-AS1A8MUL3 147 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 PTGFRP43088 359 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 OR3A4PP47883 348 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 PIGYQ3MUY2 71 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 OR13A1Q8NGR1 328 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 OR13C5Q8NGS8 318 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 PLPPR1Q8TBJ4 325 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 KIF25Q9UIL4 384 aa16.61■□□□□ 0.25
SDC1-205ENST00000447124 DIMT1Q9UNQ2 313 aaKnown RBP16.61■□□□□ 0.25
SDC1-205ENST00000447124 PLXNB1O43157 2135 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 LEUTXA8MZ59 168 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 BUB1B-PAK6H3BSN5 160 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 MAGEB3O15480 346 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 FBXO24O75426 580 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 CDRT1O95170 752 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 HTR3BO95264 441 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 OPN1MWP04001 364 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 OPN1MW2P0DN77 364 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 OPN1MW3P0DN78 364 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 ADARB1P78563 741 aaKnown RBP16.6■□□□□ 0.25
SDC1-205ENST00000447124 IL13RA2Q14627 380 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 HLA-DRB5Q30154 266 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 NSUN5P1Q3KNT7 163 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 PAN3Q58A45 887 aaKnown RBP16.6■□□□□ 0.25
SDC1-205ENST00000447124 RSBN1Q5VWQ0 802 aaPredicted RBP16.6■□□□□ 0.25
SDC1-205ENST00000447124 TMPRSS11AQ6ZMR5 421 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 ZNF485Q8NCK3 441 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 OR4D6Q8NGJ1 314 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 CYGBQ8WWM9 190 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 GGHQ92820 318 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 STMN2Q93045 179 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 TMEM106AQ96A25 262 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 KIRREL1Q96J84 757 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 NCOR1P1Q9H4R4 102 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 OR6C3Q9NZP0 311 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 ING4Q9UNL4 249 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 ZNF281Q9Y2X9 895 aa16.6■□□□□ 0.25
SDC1-205ENST00000447124 TRAV39A0A0B4J263 110 aa16.59■□□□□ 0.25
SDC1-205ENST00000447124 G3V4G9 280 aa16.59■□□□□ 0.25
SDC1-205ENST00000447124 TOR1AO14656 332 aa16.59■□□□□ 0.25
SDC1-205ENST00000447124 NFYBP25208 207 aa16.59■□□□□ 0.25
SDC1-205ENST00000447124 RSU1Q15404 277 aa16.59■□□□□ 0.25
SDC1-205ENST00000447124 TPTE2P1Q5T6R2 138 aa16.59■□□□□ 0.25
SDC1-205ENST00000447124 TTC23Q5W5X9 447 aa16.59■□□□□ 0.25
SDC1-205ENST00000447124 LAIR2Q6ISS4 152 aa16.59■□□□□ 0.25
SDC1-205ENST00000447124 CITED2Q99967 270 aaPredicted RBP16.59■□□□□ 0.25
SDC1-205ENST00000447124 LINC00574Q9H8X3 128 aa16.59■□□□□ 0.25
SDC1-205ENST00000447124 MEIKINA0A087WXM9 373 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 TRBV5-5A0A0J9YX44 114 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 IGHV3-7P01780 117 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 CD2P06729 351 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 IGFBP3P17936 291 aaPredicted RBP16.58■□□□□ 0.24
SDC1-205ENST00000447124 PRRX1P54821 245 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 RPS11P62280 158 aaKnown RBP eCLIP16.58■□□□□ 0.24
SDC1-205ENST00000447124 DMKNQ6E0U4 476 aaPredicted RBP16.58■□□□□ 0.24
SDC1-205ENST00000447124 ZFP41Q8N8Y5 198 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 ZNF565Q8N9K5 539 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 RFESDQ8TAC1 157 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 GHSRQ92847 366 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 SMIM19Q96E16 107 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 TMEM80Q96HE8 168 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 BARHL1Q9BZE3 327 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 FAM192AQ9GZU8 254 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 TMEM138Q9NPI0 162 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 CALYQ9NYX4 217 aa16.58■□□□□ 0.24
SDC1-205ENST00000447124 EXOSC1Q9Y3B2 195 aaKnown RBP16.58■□□□□ 0.24
SDC1-205ENST00000447124 IRGMA1A4Y4 181 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 NPIPB11E5RHQ5 1161 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 AMY1AP04745 511 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 AMY2AP04746 511 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 BRS3P32247 399 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 GLP1RP43220 463 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 VDAC2P45880 294 aaPredicted RBP16.57■□□□□ 0.24
SDC1-205ENST00000447124 DHRSXQ8N5I4 330 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 SUMF2Q8NBJ7 301 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 OR9G1Q8NH87 305 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 LEAP2Q969E1 77 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 CPNE2Q96FN4 548 aaPredicted RBP16.57■□□□□ 0.24
SDC1-205ENST00000447124 METTL9Q9H1A3 318 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 MMP28Q9H239 520 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 LIN7BQ9HAP6 207 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 IDI2-AS1Q9NZ38 188 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 ST3GAL6Q9Y274 331 aa16.57■□□□□ 0.24
SDC1-205ENST00000447124 DNAH3Q8TD57 4116 aa16.56■□□□□ 0.24
SDC1-205ENST00000447124 MAGEA13PA6NCF6 341 aa16.56■□□□□ 0.24
SDC1-205ENST00000447124 SH2D7A6NKC9 451 aaPredicted RBP16.56■□□□□ 0.24
SDC1-205ENST00000447124 GPX5O75715 221 aa16.56■□□□□ 0.24
SDC1-205ENST00000447124 C21orf33P30042 268 aaPredicted RBP16.56■□□□□ 0.24
SDC1-205ENST00000447124 BDKRB2P30411 391 aa16.56■□□□□ 0.24
SDC1-205ENST00000447124 ZNF93P35789 620 aaPredicted RBP16.56■□□□□ 0.24
SDC1-205ENST00000447124 PAX5Q02548 391 aa16.56■□□□□ 0.24
SDC1-205ENST00000447124 EMX1Q04741 257 aaPredicted RBP16.56■□□□□ 0.24
SDC1-205ENST00000447124 DOC2BQ14184 412 aa16.56■□□□□ 0.24
SDC1-205ENST00000447124 RBM39Q14498 530 aaKnown RBP16.56■□□□□ 0.24
SDC1-205ENST00000447124 BEAN1Q3B7T3 259 aa16.56■□□□□ 0.24
SDC1-205ENST00000447124 DDI2Q5TDH0 399 aa16.56■□□□□ 0.24
SDC1-205ENST00000447124 SAMD5Q5TGI4 173 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 192.9 ms