RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 MEOX1P50221 254 aa13.7□□□□□ -0.22
SHQ1-202ENST00000444040 NHLH2Q02577 135 aa13.7□□□□□ -0.22
SHQ1-202ENST00000444040 PLA2G2CQ5R387 149 aa13.7□□□□□ -0.22
SHQ1-202ENST00000444040 ZNF818PQ6ZRF7 136 aa13.7□□□□□ -0.22
SHQ1-202ENST00000444040 MDS2Q8NDY4 140 aa13.7□□□□□ -0.22
SHQ1-202ENST00000444040 OR5P3Q8WZ94 311 aa13.7□□□□□ -0.22
SHQ1-202ENST00000444040 IGKV1-6A0A0C4DH72 117 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 NKX2-6A6NCS4 301 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 NME2P1O60361 137 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 LILRA1O75019 489 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 CD80P33681 288 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 SRPXP78539 464 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 SECTM1Q8WVN6 248 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 PARP12Q9H0J9 701 aaKnown RBP13.69□□□□□ -0.22
SHQ1-202ENST00000444040 OPA3Q9H6K4 179 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 PRSS50Q9UI38 385 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 LIPGQ9Y5X9 500 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 BORCS7-ASMTA0A0B4J1R7 106 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 IGKV1D-13A0A0B4J2D9 117 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 SLC22A20A6NK97 555 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 IGKV1-13P0DP09 117 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 DVL1P1P54792 670 aaPredicted RBP13.69□□□□□ -0.22
SHQ1-202ENST00000444040 PLP2Q04941 152 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 SWI5Q1ZZU3 235 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 LHX6Q9UPM6 363 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 ATP23Q9Y6H3 246 aa13.69□□□□□ -0.22
SHQ1-202ENST00000444040 HSPB6O14558 160 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 IL18BPO95998 194 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 GAPTQ8N292 157 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 HIST1H2AAQ96QV6 131 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 KLF13Q9Y2Y9 288 aaPredicted RBP13.68□□□□□ -0.22
SHQ1-202ENST00000444040 KIR2DS1A0A191URI9 304 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 TSPAN9O75954 239 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 KIR2DS4P43632 304 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 UCP2P55851 309 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 KIR2DS1Q14954 304 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 SELENOHQ8IZQ5 122 aaKnown RBP13.68□□□□□ -0.22
SHQ1-202ENST00000444040 GTF3AQ92664 365 aaKnown RBP13.68□□□□□ -0.22
SHQ1-202ENST00000444040 BOD1Q96IK1 185 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 KIRREL1Q96J84 757 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 PRKACAP17612 351 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 FLI1Q01543 452 aaPredicted RBP13.68□□□□□ -0.22
SHQ1-202ENST00000444040 HIKESHIQ53FT3 197 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 SPIN3Q5JUX0 258 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 C20orf204Q6ZNR8 217 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 MCEMP1Q8IX19 187 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 SUMF2Q8NBJ7 301 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 LILRB1Q8NHL6 650 aaPredicted RBP13.68□□□□□ -0.22
SHQ1-202ENST00000444040 ZNF488Q96MN9 340 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 GPHA2Q96T91 129 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 SCRT1Q9BWW7 348 aa13.68□□□□□ -0.22
SHQ1-202ENST00000444040 UBE2J1Q9Y385 318 aaPredicted RBP13.68□□□□□ -0.22
SHQ1-202ENST00000444040 GPR179Q6PRD1 2367 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 NFYBP25208 207 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 GNMTQ14749 295 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 PCSK4Q6UW60 755 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 ZNF695Q8IW36 515 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 ZNF565Q8N9K5 539 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 ZFP62Q8NB50 900 aaPredicted RBP13.67□□□□□ -0.22
SHQ1-202ENST00000444040 MRPL30Q8TCC3 161 aaKnown RBP13.67□□□□□ -0.22
SHQ1-202ENST00000444040 PLK3Q9H4B4 646 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 MPC1Q9Y5U8 109 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 KLRC4-KLRK1H3BQV0 150 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 H7C2Y5 167 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 CTXN2P0C2S0 81 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 LMO1P25800 156 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 SNCAP37840 140 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 FHITP49789 147 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 EWSR1Q01844 656 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHQ1-202ENST00000444040 SLC10A1Q14973 349 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 MIDNQ504T8 468 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 LINC00596Q86U02 117 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 OR1K1Q8NGR3 316 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 NEK7Q8TDX7 302 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 SH3BGRL3Q9H299 93 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 C12orf49Q9H741 205 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 CACFD1Q9UGQ2 172 aa13.67□□□□□ -0.22
SHQ1-202ENST00000444040 ZNF407Q9C0G0 2248 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 HEXAP06865 529 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 SPINK2P20155 84 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 PVALBP20472 110 aaPredicted RBP13.66□□□□□ -0.22
SHQ1-202ENST00000444040 UCP1P25874 307 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 APLNRP35414 380 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 OR2C3Q8N628 320 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 LOXL4Q96JB6 756 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 IP6K3Q96PC2 410 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 RIMS4Q9H426 269 aaPredicted RBP13.66□□□□□ -0.22
SHQ1-202ENST00000444040 CCL28Q9NRJ3 127 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 CELSR3Q9NYQ7 3312 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 TRBV6-6A0A0A6YYG2 114 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 TRAV24A0A0B4J272 114 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 CLEC18AA5D8T8 446 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 OR5B21A6NL26 309 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 ANKRD30BLA7E2S9 258 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 TSPAN15O95858 294 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 IL32P24001 234 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 NKX2-1P43699 371 aaPredicted RBP13.66□□□□□ -0.22
SHQ1-202ENST00000444040 POLR2GP62487 172 aaKnown RBP eCLIP13.66□□□□□ -0.22
SHQ1-202ENST00000444040 CLN3Q13286 438 aa13.66□□□□□ -0.22
SHQ1-202ENST00000444040 FAM76BQ5HYJ3 339 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms