RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 ID3Q02535 119 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 TBC1D26Q86UD7 250 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 OR56B2PQ8NGI1 322 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 ABHD3Q8WU67 409 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 SFT2D1Q8WV19 159 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 HIST1H2BAQ96A08 127 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 SLC7A10Q9NS82 523 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 NKX2-6A6NCS4 301 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 NPIPB11E5RHQ5 1161 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 NME2P1O60361 137 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 PRH1P02810 166 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 S100A8P05109 93 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 ARF1P84077 181 aaKnown RBP11.73□□□□□ -0.53
COL6A3-207ENST00000433762 NHLH2Q02577 135 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 AWAT1Q58HT5 328 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 CMTM1Q8IZ96 169 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 CT55Q8WUE5 264 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 PSMF1Q92530 271 aa11.73□□□□□ -0.53
COL6A3-207ENST00000433762 ESRP2Q9H6T0 727 aaKnown RBP11.73□□□□□ -0.53
COL6A3-207ENST00000433762 C7orf77A4D0Y5 90 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 FAM221AA4D161 298 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 OR5B21A6NL26 309 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 TRAPPC2LH3BP13 241 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 LAMTOR5O43504 91 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 AGAP20933 346 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 ID4P47928 161 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 NPBWR2P48146 333 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 LHX2P50458 406 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 CTAG1AP78358 180 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 HABP2Q14520 560 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-207ENST00000433762 SP5Q6BEB4 398 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF880Q6PDB4 577 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 MRPL21Q7Z2W9 205 aaKnown RBP11.72□□□□□ -0.53
COL6A3-207ENST00000433762 EIF5A2Q9GZV4 153 aaKnown RBP11.72□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF703Q9H7S9 590 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-207ENST00000433762 KCNJ16Q9NPI9 418 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 P4HTMQ9NXG6 502 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 MPC1Q9Y5U8 109 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 SDK2Q58EX2 2172 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 NCOR1O75376 2440 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 SYNGR4O95473 234 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 BCL3P20749 454 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 CLINT1Q14677 625 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 IGSF11Q5DX21 431 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 C14orf79Q96F83 325 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 SPRY4Q9C004 299 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 RPS10P5Q9NQ39 176 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 KIAA1456Q9P272 454 aa11.72□□□□□ -0.53
COL6A3-207ENST00000433762 SLC22A20A6NK97 555 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 J3QW42 95 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 CLDN18P56856 261 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 VAMP2P63027 116 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 BRICD5Q6PL45 260 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 MEX3BQ6ZN04 569 aaKnown RBP11.71□□□□□ -0.53
COL6A3-207ENST00000433762 DBX2Q6ZNG2 339 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 TMEM252Q8N6L7 170 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 OR2M7Q8NG81 312 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF845Q96IR2 970 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-207ENST00000433762 CABLES2Q9BTV7 478 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 PKIBQ9C010 78 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 STRADBQ9C0K7 418 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 ABI3Q9P2A4 366 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 LAMA1P25391 3075 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 DOCK10Q96BY6 2186 aa11.71□□□□□ -0.53
COL6A3-207ENST00000433762 IGSF23A1L1A6 192 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 UBE2CO00762 179 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 MEOX2P50222 304 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 IL24Q13007 206 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 HSD17B11Q8NBQ5 300 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 SIGLEC12Q96PQ1 595 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 CLCC1Q96S66 551 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 C12orf57Q99622 126 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 TCEAL7Q9BRU2 100 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 TREM2Q9NZC2 230 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 LRFN1Q9P244 771 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 LOXL2Q9Y4K0 774 aa11.71□□□□□ -0.54
COL6A3-207ENST00000433762 PCSK5Q92824 1860 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 PINLYPA6NC86 204 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 C5orf52A6NGY3 159 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 SMIM6P0DI80 62 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 ZNF44P15621 663 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 ATP6V0CP27449 155 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 HAAOP46952 286 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 AKR1D1P51857 326 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 ZNF818PQ6ZRF7 136 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 MOB1BQ7L9L4 216 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 ZNF573Q86YE8 665 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 C1QL4Q86Z23 238 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 C1orf210Q8IVY1 113 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 SLAMF9Q96A28 289 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 HIST1H2AAQ96QV6 131 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 FGF23Q9GZV9 251 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-207ENST00000433762 SH3BGRL3Q9H299 93 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 A0A1B0GU03 582 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 DEGS1O15121 323 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 DFFBO76075 338 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 ZNF205O95201 554 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 SLC34A2O95436 690 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 HBE1P02100 147 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 HERPUD1Q15011 391 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms