RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PPP1R1AQ13522 171 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 MOB3CQ70IA8 216 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 PEG10Q86TG7 708 aaKnown RBP11.35□□□□□ -0.59
LIMS1-204ENST00000409441 LHFPL1Q86WI0 220 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 TMEM185AQ8NFB2 350 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 PAPOLGQ9BWT3 736 aaKnown RBP11.35□□□□□ -0.59
LIMS1-204ENST00000409441 FBXO9Q9UK97 447 aaPredicted RBP11.35□□□□□ -0.59
LIMS1-204ENST00000409441 GPR132Q9UNW8 380 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 MAB21L2Q9Y586 359 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 A0A0B4J2A0 478 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 LINC00862A6NCI5 91 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 ZNF850A8MQ14 1090 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 C17orf100A8MU93 164 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 H0YL77 283 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 RPA2P15927 270 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 DTYMKP23919 212 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 S100A11P31949 105 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 IL13RA1P78552 427 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 SURF2Q15527 256 aaPredicted RBP11.35□□□□□ -0.59
LIMS1-204ENST00000409441 DMRTC1Q5HYR2 192 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 PLCXD3Q63HM9 321 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 C17orf107Q6ZR85 190 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 OR2Z1Q8NG97 314 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 OR5AP2Q8NGF4 316 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 MARCH1Q8TCQ1 289 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 IGFBPL1Q8WX77 278 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 EMG1Q92979 244 aaKnown RBP11.35□□□□□ -0.59
LIMS1-204ENST00000409441 WDR89Q96FK6 387 aaPredicted RBP11.35□□□□□ -0.59
LIMS1-204ENST00000409441 CCL19Q99731 98 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 VRK1Q99986 396 aaPredicted RBP11.35□□□□□ -0.59
LIMS1-204ENST00000409441 PPA2Q9H2U2 334 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 PLEKHJ1Q9NW61 149 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 SHPKQ9UHJ6 478 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 ZDHHC8Q9ULC8 765 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 NOS1APO75052 506 aaPredicted RBP11.34□□□□□ -0.59
LIMS1-204ENST00000409441 IGHV1-46P01743 117 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 GABRR1P24046 479 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 PMELP40967 661 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 PPOXP50336 477 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 PDZK1IP1Q13113 114 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 PRDX4Q13162 271 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 EXOSC2Q13868 293 aaKnown RBP11.34□□□□□ -0.59
LIMS1-204ENST00000409441 TMEM128Q5BJH2 165 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 CLLU1Q5K131 121 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 TMEM65Q6PI78 240 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 TMUB2Q71RG4 321 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 OSR2Q8N2R0 312 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 FN3KRPQ9HA64 309 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 COMMD9Q9P000 198 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 MPC1Q9Y5U8 109 aa11.34□□□□□ -0.59
LIMS1-204ENST00000409441 AKAP6Q13023 2319 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 TACC2O95359 2948 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 FBN2P35556 2912 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 FXYD6-FXYD2A0A087WZ82 144 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 A0A1B0GWJ7 208 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 OVOL3O00110 214 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 MLNRO43193 412 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 SPRY1O43609 319 aaPredicted RBP11.33□□□□□ -0.6
LIMS1-204ENST00000409441 ANGPTL7O43827 346 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 SLC25A4P12235 298 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 CHATP28329 748 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 OR8G1Q15617 311 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 CHRFAM7AQ494W8 412 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 OVCH2Q7RTZ1 564 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 C6orf201Q7Z4U5 140 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 SAXO1Q8IYX7 474 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 OR8H3Q8N146 312 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 ADAD2Q8NCV1 583 aaKnown RBP11.33□□□□□ -0.6
LIMS1-204ENST00000409441 OR10AD1Q8NGE0 317 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 HIST1H2AAQ96QV6 131 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 DIRC2Q96SL1 478 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 ST6GALNAC5Q9BVH7 336 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 FXYD6Q9H0Q3 95 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 EHFQ9NZC4 300 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 AUP1Q9Y679 476 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 SPG11Q96JI7 2443 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 BAHCC1Q9P281 2608 aa11.33□□□□□ -0.6
LIMS1-204ENST00000409441 RAI1Q7Z5J4 1906 aaPredicted RBP11.32□□□□□ -0.6
LIMS1-204ENST00000409441 UNC79Q9P2D8 2635 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 TRAV14DV4A0A0A6YYC5 116 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 DBX1A6NMT0 343 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 ARPC5O15511 151 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 RP2O75695 350 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 ADH4P08319 380 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 AKR1C4P17516 323 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 VAMP1P23763 118 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 CDKN1AP38936 164 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 RAB14P61106 215 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 CEACAM21Q3KPI0 293 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 C6orf183Q5T699 404 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 SIGIRRQ6IA17 410 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 ZDHHC23Q8IYP9 409 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 Q8NFD4 153 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 OR5P3Q8WZ94 311 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 ADAT1Q9BUB4 502 aaKnown RBP11.32□□□□□ -0.6
LIMS1-204ENST00000409441 PDCD10Q9BUL8 212 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 RAB1BQ9H0U4 201 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 C5orf66Q9H5L9 145 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 ABCA12Q86UK0 2595 aa11.32□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A10PA6NDY2 464 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms