RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 CHST1O43916 411 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 WISP1O95388 367 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 MUC1P15941 1255 aaPredicted RBP16.08■□□□□ 0.16
USP48-204ENST00000400301 NHLH2Q02577 135 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 OR10P1Q8NGE3 313 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 OR5A2Q8NGI9 324 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 PLPPR2Q96GM1 343 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 ADGRG7Q96K78 797 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 NIT2Q9NQR4 276 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 PRDM6Q9NQX0 595 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 IGKV1-9A0A0C4DH69 117 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 HOXD4P09016 255 aaPredicted RBP16.08■□□□□ 0.16
USP48-204ENST00000400301 NFYBP25208 207 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 EWSR1Q01844 656 aaKnown RBP eCLIP16.08■□□□□ 0.16
USP48-204ENST00000400301 MOB1BQ7L9L4 216 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 NRIP2Q9BQI9 281 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 TICRRQ7Z2Z1 1910 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 ZNF727A8MUV8 499 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 METTL15P1P0C7V9 234 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 ZADH2Q8N4Q0 377 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 RFESDQ8TAC1 157 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 SLC39A7Q92504 469 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 RAB40CQ96S21 281 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 WNT5BQ9H1J7 359 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 PARP11Q9NR21 331 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 HSF4Q9ULV5 492 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 COLQQ9Y215 455 aaPredicted RBP16.08■□□□□ 0.16
USP48-204ENST00000400301 WSB1Q9Y6I7 421 aa16.08■□□□□ 0.16
USP48-204ENST00000400301 TMEM30CPA0ZSE6 113 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 PMS2P1A4D2B8 440 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 CRYM-AS1A6NIL9 109 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 K7ESF4 209 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 DEDDO75618 318 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 HOXA1P49639 335 aaPredicted RBP16.07■□□□□ 0.16
USP48-204ENST00000400301 PPP1CBP62140 327 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 PHYHD1Q5SRE7 291 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 TTTY12Q9BZ98 90 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 HIPK2Q9H2X6 1198 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 KCNMB2Q9Y691 235 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 C21orf140B9A014 251 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 ACTL6BO94805 426 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 ACKR3P25106 362 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 PPP1R32Q7Z5V6 425 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 FAM24BQ8N5W8 94 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 PROCRQ9UNN8 238 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 OSGIN2Q9Y236 505 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 MPTX1A8MV57 137 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 A8MXK9 166 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 PTAFRP25105 342 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 GPR12P47775 334 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 DYNLT3P51808 116 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 FAM3AP98173 230 aa16.07■□□□□ 0.16
USP48-204ENST00000400301 MBPP02686 304 aaPredicted RBP16.06■□□□□ 0.16
USP48-204ENST00000400301 MT-ND4LP03901 98 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 HKR1P10072 659 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 DAOP14920 347 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 DEFB108BQ8NET1 73 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 IGLV3-32A0A0A0MS00 114 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 UMODP07911 640 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 SEC11BP0C7V7 166 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 SULT1A2P50226 295 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 RAB13P51153 203 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 DEFB109BQ30KR1 87 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 ADAMTS17Q8TE56 1095 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 FBLN5Q9UBX5 448 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 CDIPTO14735 213 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 RPS16P62249 146 aaKnown RBP16.06■□□□□ 0.16
USP48-204ENST00000400301 TMEM251Q8N6I4 163 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 POC1AQ8NBT0 407 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 ISOC2Q96AB3 205 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 TLNRD1Q9H1K6 362 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 ARV1Q9H2C2 271 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 MMP24Q9Y5R2 645 aa16.06■□□□□ 0.16
USP48-204ENST00000400301 AWAT1Q58HT5 328 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 RPUSD4Q96CM3 377 aaKnown RBP16.05■□□□□ 0.16
USP48-204ENST00000400301 HES7Q9BYE0 225 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 GFOD1Q9NXC2 390 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 FZR1Q9UM11 496 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 RIF1Q5UIP0 2472 aaKnown RBP16.05■□□□□ 0.16
USP48-204ENST00000400301 LDLRAD4O15165 306 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 CA11O75493 328 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 C1QL1O75973 258 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 GAPDHP04406 335 aaKnown RBP16.05■□□□□ 0.16
USP48-204ENST00000400301 SMIM21Q3B7S5 101 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 V9GYS6 101 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 UBE2L5PA0A1B0GUS4 154 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 PPP1R2P9O14990 202 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 CRYAAP02489 173 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 FOXO1Q12778 655 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 NUP210Q8TEM1 1887 aaPredicted RBP16.05■□□□□ 0.16
USP48-204ENST00000400301 SCTP09683 121 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 SNCAP37840 140 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 NPBWR2P48146 333 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 PMP22Q01453 160 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 ASPHD2Q6ICH7 369 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 ZNF429Q86V71 674 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 GPHA2Q96T91 129 aa16.05■□□□□ 0.16
USP48-204ENST00000400301 A0A0G2JMM0 328 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 A0A1W2PPB8 328 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 A0A1W2PRS3 328 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms