RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TMEM210A6NLX4 147 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 MPZL1O95297 269 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 NPSP0C0P6 89 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 H2BFMP0C1H6 154 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 KLK2P20151 261 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 CSNK2A1P68400 391 aaPredicted RBP9.66□□□□□ -0.86
CUX1-204ENST00000393824 IL13RA2Q14627 380 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 FAM89BQ8N5H3 189 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 CSNK2A3Q8NEV1 391 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 OR10G3Q8NGC4 313 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 RASL10BQ96S79 203 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 ST6GALNAC5Q9BVH7 336 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 TMEM59Q9BXS4 323 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 GPR87Q9BY21 358 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 FAM206AQ9NX38 181 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 DKKL1Q9UK85 242 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 MRPS28Q9Y2Q9 187 aaKnown RBP9.66□□□□□ -0.86
CUX1-204ENST00000393824 MRPS18CQ9Y3D5 142 aaKnown RBP9.66□□□□□ -0.86
CUX1-204ENST00000393824 CHTOPQ9Y3Y2 248 aaKnown RBP9.66□□□□□ -0.86
CUX1-204ENST00000393824 NBEAQ8NFP9 2946 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 A0A1B0GV50 99 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 MED19A0JLT2 244 aaPredicted RBP9.66□□□□□ -0.86
CUX1-204ENST00000393824 SCAF4O95104 1147 aaKnown RBP9.66□□□□□ -0.86
CUX1-204ENST00000393824 SCGB1D2O95969 90 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 AMBPP02760 352 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 H3F3AP84243 136 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 ICAM4Q14773 271 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 RTP5Q14D33 572 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 TMEM176BQ3YBM2 270 aaPredicted RBP9.66□□□□□ -0.86
CUX1-204ENST00000393824 COA6Q5JTJ3 125 aaKnown RBP9.66□□□□□ -0.86
CUX1-204ENST00000393824 ZNF506Q5JVG8 444 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 SULF2Q8IWU5 870 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 OR5L2Q8NGL0 311 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 DEFB126Q9BYW3 111 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 OR51B6Q9H340 312 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 CDH20Q9HBT6 801 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 WSB1Q9Y6I7 421 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 ZFAND5O76080 213 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 AHSA1O95433 338 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 CYC1P08574 325 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 OR5AC1P0C628 307 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 PGA4P0DJD7 388 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 PGA5P0DJD9 388 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 GABRR1P24046 479 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 HLA-DRB3P79483 266 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 KLHL24Q6TFL4 600 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 GRINAQ7Z429 371 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 CYB561D1Q8N8Q1 229 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 OR10G4Q8NGN3 311 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 URM1Q9BTM9 101 aaKnown RBP9.65□□□□□ -0.86
CUX1-204ENST00000393824 SNHG12Q9BXW3 62 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 MOB1AQ9H8S9 216 aa9.65□□□□□ -0.86
CUX1-204ENST00000393824 CLDN34H7C241 214 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 RRP8O43159 456 aaKnown RBP9.65□□□□□ -0.87
CUX1-204ENST00000393824 TLX3O43711 291 aaPredicted RBP9.65□□□□□ -0.87
CUX1-204ENST00000393824 SOX15O60248 233 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 IL12BP29460 328 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 DAP3P51398 398 aaKnown RBP9.65□□□□□ -0.87
CUX1-204ENST00000393824 DCAF10Q5QP82 559 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 IGF2-ASQ6U949 168 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 CLEC2AQ6UVW9 174 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 RNF144BQ7Z419 303 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 LRTM2Q8N967 370 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 RELTQ969Z4 430 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 ADGRG7Q96K78 797 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 SNX22Q96L94 193 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 BANF2Q9H503 90 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 LIPGQ9Y5X9 500 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 RELNP78509 3460 aa9.65□□□□□ -0.87
CUX1-204ENST00000393824 ARID1AO14497 2285 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 FREM3P0C091 2139 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 EML6Q6ZMW3 1958 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 FOXI3A8MTJ6 420 aaPredicted RBP9.64□□□□□ -0.87
CUX1-204ENST00000393824 DFFBO76075 338 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 METTL15P1P0C7V9 234 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 APLNRP35414 380 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 PNRC1Q12796 327 aaPredicted RBP9.64□□□□□ -0.87
CUX1-204ENST00000393824 CHRFAM7AQ494W8 412 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 GALNTL5Q7Z4T8 443 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 OR5AS1Q8N127 324 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 CPEB3Q8NE35 698 aaKnown RBP9.64□□□□□ -0.87
CUX1-204ENST00000393824 OR2G3Q8NGZ4 309 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 ASB10Q8WXI3 467 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 CYYR1Q96J86 154 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 EXPH5Q8NEV8 1989 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 G3V3Y1 287 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 CA11O75493 328 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 PTGDSP41222 190 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 ZNF266Q14584 549 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 RAB35Q15286 201 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 EXT1Q16394 746 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 C4orf17Q53FE4 359 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 PRAMEF20Q5VT98 475 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 RBMXL1Q96E39 390 aaKnown RBP9.64□□□□□ -0.87
CUX1-204ENST00000393824 KCNK17Q96T54 332 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 TBL1XR1Q9BZK7 514 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 PBOV1Q9GZY1 135 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 OR10A2Q9H208 303 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 HSF4Q9ULV5 492 aa9.64□□□□□ -0.87
CUX1-204ENST00000393824 A0A1W2PP11 408 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms