RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 HAGHLQ6PII5 290 aaPredicted RBP7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 SLC22A25Q6T423 547 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 COMMD7Q86VX2 200 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 BHLHE23Q8NDY6 225 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 OR10J5Q8NHC4 309 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 NKX3-1Q99801 234 aaPredicted RBP7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 NRIP2Q9BQI9 281 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 ZNF471Q9BX82 626 aaPredicted RBP7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 TMEM222Q9H0R3 208 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 WDR13Q9H1Z4 485 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 C12orf49Q9H741 205 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 ZNF71Q9NQZ8 489 aaPredicted RBP7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 MBNL3Q9NUK0 354 aaKnown RBP7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 KCNIP1Q9NZI2 227 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 MBD2Q9UBB5 411 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 ZNF230Q9UIE0 474 aaPredicted RBP7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 LAMP3Q9UQV4 416 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 WIPI2Q9Y4P8 454 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 CSAG2Q9Y5P2 127 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 LIPGQ9Y5X9 500 aa7.45□□□□□ -1.22
SNRNP40-202ENST00000373720 NCKAP5O14513 1909 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 AHCTF1Q8WYP5 2266 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 C3orf85A0A1B0GTC6 90 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 MFSD2BA6NFX1 497 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 VSTM5A8MXK1 200 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 H0Y980 276 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 K7EPK0 472 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 FGF16O43320 207 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 NGFP01138 241 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 FGF2P09038 288 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 PRKACAP17612 351 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 BCL3P20749 454 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 OPRM1P35372 400 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 BAXQ07812 192 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 DEFB109BQ30KR1 87 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 HIKESHIQ53FT3 197 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 C6orf183Q5T699 404 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 IL34Q6ZMJ4 242 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 RNF144BQ7Z419 303 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 LINC00528Q8N1L1 170 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 SUMF2Q8NBJ7 301 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 UBAC2Q8NBM4 344 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 BVESQ8NE79 360 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 OR5D13Q8NGL4 314 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 OR1J1Q8NGS3 322 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 MUCL1Q96DR8 90 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 MARS2Q96GW9 593 aaKnown RBP7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 SEC22AQ96IW7 307 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 C18orf12Q96KH6 178 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 CITED4Q96RK1 184 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 DIRC2Q96SL1 478 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 RNF126Q9BV68 326 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 SLC25A31Q9H0C2 315 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 SMDT1Q9H4I9 107 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 HES4Q9HCC6 221 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 ELOVL5Q9NYP7 299 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 OR2W1Q9Y3N9 320 aa7.44□□□□□ -1.22
SNRNP40-202ENST00000373720 A0A1B0GU03 582 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 B8ZZF3 427 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 MSTNO14793 375 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 CFDP00746 253 aaPredicted RBP7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 CGAP01215 116 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 SEC11BP0C7V7 166 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 ANOS1P23352 680 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 UCP1P25874 307 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 UCNP55089 124 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 HLA-DRB3P79483 266 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 ZNF266Q14584 549 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 SLC9A3R2Q15599 337 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 IGFBP7Q16270 282 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 AANATQ16613 207 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 SMIM21Q3B7S5 101 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 ANKRD55Q3KP44 614 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 FAM209AQ5JX71 171 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 SLC35E4Q6ICL7 350 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 ZNF497Q6ZNH5 498 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 C17orf107Q6ZR85 190 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 BHLHA15Q7RTS1 189 aaPredicted RBP7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 FAM219AQ8IW50 185 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 SPAG16Q8N0X2 631 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 OR5T2Q8NGG2 359 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 KLF14Q8TD94 323 aaPredicted RBP7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 NEK7Q8TDX7 302 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 GLYATL2Q8WU03 294 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 LSM10Q969L4 123 aaKnown RBP7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 MSI2Q96DH6 328 aaKnown RBP7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 ADAT1Q9BUB4 502 aaKnown RBP7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 PLEKHF2Q9H8W4 249 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 SDHAF2Q9NX18 166 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 TAAR3PQ9P1P4 343 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 DKK4Q9UBT3 224 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 ZNF629Q9UEG4 869 aaPredicted RBP7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 PURGQ9UJV8 347 aaKnown RBP7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 MMP24Q9Y5R2 645 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 COL6A3P12111 3177 aa7.43□□□□□ -1.22
SNRNP40-202ENST00000373720 WDR87Q6ZQQ6 2873 aa7.42□□□□□ -1.22
SNRNP40-202ENST00000373720 FAM90A26D6RGX4 464 aa7.42□□□□□ -1.22
SNRNP40-202ENST00000373720 TRIM77I1YAP6 450 aa7.42□□□□□ -1.22
SNRNP40-202ENST00000373720 I3L521 148 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms