RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PRR13Q9NZ81 148 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 ST6GALNAC2Q9UJ37 374 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 GOLT1BQ9Y3E0 138 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 ZNF785A8K8V0 405 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 KLK10O43240 276 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 SPINK4O60575 86 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 RBP4P02753 201 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 KLF3P57682 345 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 TMEM211Q6ICI0 200 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 WDR74Q6RFH5 385 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 TMEM108Q6UXF1 575 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 TCTEX1D1Q8N7M0 179 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 OR1L4Q8NGR5 311 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 PTX4Q96A99 478 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 TRAF4Q9BUZ4 470 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 AMDHD2Q9Y303 409 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 CACNA1EQ15878 2313 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 CDRT15L2A8MXV6 281 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 FGF8P55075 233 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 MGAT2Q10469 447 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 SRSF5Q13243 272 aaKnown RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 FNDC7Q5VTL7 733 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 Q9N2K0 584 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 SIRT4Q9Y6E7 314 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 CA11O75493 328 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 PNPP00491 289 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 BMP5P22003 454 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 RPS4Y1P22090 263 aaKnown RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 TNFAIP6P98066 277 aaPredicted RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 ISOC2Q96AB3 205 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 TM4SF19Q96DZ7 209 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 ATP5SQ99766 215 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 CXXC4Q9H2H0 198 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 NAT8Q9UHE5 227 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 C3orf80F5H4A9 247 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 SPINT1O43278 529 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 DNPH1O43598 174 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 IGF2P01344 180 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 CD1AP06126 327 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 PMS2P11Q13670 270 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 CBLN2Q8IUK8 224 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 VSTM2AQ8TAG5 236 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 ABCA1O95477 2261 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 FOXS1O43638 330 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 RPL29P47914 159 aaKnown RBP10.04□□□□□ -0.8
PTPRF-203ENST00000372407 MRPS11P82912 194 aaKnown RBP10.04□□□□□ -0.8
PTPRF-203ENST00000372407 FAM78BQ5VT40 261 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 GAPTQ8N292 157 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 TMEM52Q8NDY8 209 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 CHST5Q9GZS9 411 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 GHITMQ9H3K2 345 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 OR1A1Q9P1Q5 309 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 CBY1Q9Y3M2 126 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 CENPVL1A0A0U1RR11 272 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 J3QT63 122 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 SEC11BP0C7V7 166 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 TMIGD3P0DMS9 266 aaPredicted RBP10.04□□□□□ -0.8
PTPRF-203ENST00000372407 GZMHP20718 246 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 EFNB2P52799 333 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 NANOS3P60323 173 aaKnown RBP10.04□□□□□ -0.8
PTPRF-203ENST00000372407 WDR73Q6P4I2 378 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 TIPARPQ7Z3E1 657 aaKnown RBP10.04□□□□□ -0.8
PTPRF-203ENST00000372407 MISP3Q96FF7 219 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 RAB33BQ9H082 229 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 CCL28Q9NRJ3 127 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 THYN1Q9P016 225 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 FZR1Q9UM11 496 aa10.04□□□□□ -0.8
PTPRF-203ENST00000372407 NCBP2LA6PVI3 153 aaKnown RBP10.03□□□□□ -0.8
PTPRF-203ENST00000372407 B4DEV8 164 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 MOSPD3O75425 235 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 SMIM17P0DL12 118 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 AMTP48728 403 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 COX19Q49B96 90 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 RNASEKQ6P5S7 137 aaKnown RBP10.03□□□□□ -0.8
PTPRF-203ENST00000372407 CCL17Q92583 94 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 PRSS27Q9BQR3 290 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 TMEM167BQ9NRX6 74 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 PRSS50Q9UI38 385 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 TCFL5Q9UL49 500 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 OR5H1A6NKK0 313 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 ANKRD34CP0C6C1 535 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 ZNF345Q14585 488 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 TMEM183BQ1AE95 376 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 OR2I1PQ8NGU4 316 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 OR6S1Q8NH40 331 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 ADAT3Q96EY9 351 aaPredicted RBP10.03□□□□□ -0.8
PTPRF-203ENST00000372407 MANBALQ9NQG1 85 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 GLRX2Q9NS18 164 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 VAX2Q9UIW0 290 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 RBBP6Q7Z6E9 1792 aaKnown RBP10.03□□□□□ -0.8
PTPRF-203ENST00000372407 CDIPTO14735 213 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 C1QCP02747 245 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 DAOP14920 347 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 HFEQ30201 348 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 BTNL3Q6UXE8 466 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 LYZL2Q7Z4W2 148 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 OR10G8Q8NGN5 311 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 PRSS3P2Q8NHM4 247 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 ELF5Q9UKW6 265 aaPredicted RBP10.03□□□□□ -0.8
PTPRF-203ENST00000372407 USF1P22415 310 aaPredicted RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms