RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ARL17AQ8IVW1 177 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 SLC16A11Q8NCK7 471 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 PPP1R3EQ9H7J1 279 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 ADAMTS5Q9UNA0 930 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 H0YGG7 62 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 IGF2P01344 180 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 FLT3LGP49771 235 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 ALG14Q96F25 216 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 OR4C45A6NMZ5 311 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 COL8A1P27658 744 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 C9orf131Q5VYM1 1079 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 VASH2Q86V25 355 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 LPAR5Q9H1C0 372 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 COA3Q9Y2R0 106 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-203ENST00000353578 DOCK7Q96N67 2140 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 ACP1P24666 158 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 MFRPQ9BY79 579 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 KIR3DX1Q9H7L2 352 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 TINAGQ9UJW2 476 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 DNAL4O96015 105 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 RPL30P62888 115 aaKnown RBP11.23□□□□□ -0.61
COL6A3-203ENST00000353578 RBKSQ9H477 322 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 TMEM242Q9NWH2 141 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 B4GALT3O60512 393 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 GCM2O75603 506 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-203ENST00000353578 CAMPP49913 170 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 ROM1Q03395 351 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 OR8A1Q8NGG7 326 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 SSBP4Q9BWG4 385 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-203ENST00000353578 TRAV39A0A0B4J263 110 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 NUTF2P61970 127 aaKnown RBP11.23□□□□□ -0.61
COL6A3-203ENST00000353578 TXNRD2Q9NNW7 524 aa11.23□□□□□ -0.61
COL6A3-203ENST00000353578 SIGLEC1Q9BZZ2 1709 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 C1QTNF9BB2RNN3 333 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 LINC00869P0C866 280 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 NPPBP16860 134 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 MVB12AQ96EY5 273 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 ST20Q9HBF5 79 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 PISDQ9UG56 409 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 NMUP48645 174 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 MRGPRDQ8TDS7 321 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 KCNS1Q96KK3 526 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 HSPB6O14558 160 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 AGAP20933 346 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 ELOVL5Q9NYP7 299 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 HOXA5P20719 270 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 OPRM1P35372 400 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 GALNT14Q96FL9 552 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 SIGLEC11Q96RL6 698 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 RNF39Q9H2S5 420 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 STARD5Q9NSY2 213 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 MRPL16Q9NX20 251 aaKnown RBP11.22□□□□□ -0.61
COL6A3-203ENST00000353578 SIGLEC7Q9Y286 467 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 SKP2Q13309 424 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 METTL27Q8N6F8 245 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-203ENST00000353578 GRAMD2BQ96HH9 432 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 SIRT5Q9NXA8 310 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 CYSLTR1Q9Y271 337 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 CADP27708 2225 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 MYADML2A6NDP7 307 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 PITX1P78337 314 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-203ENST00000353578 ZNF770Q6IQ21 691 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-203ENST00000353578 TLNRD1Q9H1K6 362 aa11.22□□□□□ -0.61
COL6A3-203ENST00000353578 LINC00587B1AMM8 73 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 TCF24Q7RTU0 167 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 NKAIN4Q8IVV8 208 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 C4orf45Q96LM5 186 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 SGK494Q96LW2 274 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 TRGV10A0A0A0MS01 117 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 LIM2P55344 173 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 GAGE1Q13065 139 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 TMEM249Q2WGJ8 235 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 S1PR2O95136 353 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 PMVKQ15126 192 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 FBLN7Q53RD9 439 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 HSD17B10Q99714 261 aaKnown RBP11.21□□□□□ -0.61
COL6A3-203ENST00000353578 CER1O95813 267 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 RPL34P49207 117 aaKnown RBP11.21□□□□□ -0.61
COL6A3-203ENST00000353578 PCBP3P57721 371 aaKnown RBP11.21□□□□□ -0.61
COL6A3-203ENST00000353578 SLCO1C1Q9NYB5 712 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 OR51B2Q9Y5P1 312 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 HPRT1P00492 218 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 CTAG1AP78358 180 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 PQLC2Q6ZP29 291 aa11.21□□□□□ -0.61
COL6A3-203ENST00000353578 RCC1P18754 421 aaPredicted RBP11.21□□□□□ -0.62
COL6A3-203ENST00000353578 RPS11P62280 158 aaKnown RBP eCLIP11.21□□□□□ -0.62
COL6A3-203ENST00000353578 LTC4SQ16873 150 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 PRSS38A1L453 326 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 COMPP49747 757 aaPredicted RBP11.21□□□□□ -0.62
COL6A3-203ENST00000353578 DECR2Q9NUI1 292 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 B9D1Q9UPM9 204 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 RALGAPA2Q2PPJ7 1873 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 H0YIG0 161 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 CD46P15529 392 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 CXCL2P19875 107 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 NOVP48745 357 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 CKS1BP61024 79 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 ZNF506Q5JVG8 444 aa11.21□□□□□ -0.62
COL6A3-203ENST00000353578 NFAM1Q8NET5 270 aaPredicted RBP11.21□□□□□ -0.62
COL6A3-203ENST00000353578 ARHGAP5-AS1Q96IT6 56 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms