RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SRSF7Q16629 238 aaKnown RBP eCLIP18.64■□□□□ 0.58
SHMT1-202ENST00000352886 OR5P3Q8WZ94 311 aa18.64■□□□□ 0.58
SHMT1-202ENST00000352886 ZDHHC8Q9ULC8 765 aa18.64■□□□□ 0.58
SHMT1-202ENST00000352886 ANKRD30BLA7E2S9 258 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 GPR137BO60478 399 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 CD46P15529 392 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 HERPUD1Q15011 391 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 Q6ZRG5 221 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 TBC1D26Q86UD7 250 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 LDLRAD3Q86YD5 345 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 FAM185AQ8N0U4 392 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 CLRN3Q8NCR9 226 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 ZNF488Q96MN9 340 aa18.64■□□□□ 0.57
SHMT1-202ENST00000352886 BDP1A6H8Y1 2624 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 F12P00748 615 aaPredicted RBP18.63■□□□□ 0.57
SHMT1-202ENST00000352886 GLAP06280 429 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 ID4P47928 161 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 KCNJ3P48549 501 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 IL13RA2Q14627 380 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 OR1K1Q8NGR3 316 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 SEC11CQ9BY50 192 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 TMEM222Q9H0R3 208 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 PARP11Q9NR21 331 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 FRYQ5TBA9 3013 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 AGPAT2O15120 278 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 P2RY1P47900 373 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 TGIF1Q15583 401 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 GPR157Q5UAW9 335 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 TMEM88Q6PEY1 159 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 BTNL8Q6UX41 500 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 ZNF818PQ6ZRF7 136 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 ZNF565Q8N9K5 539 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 OR4D5Q8NGN0 318 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 USB1Q9BQ65 265 aaKnown RBP18.63■□□□□ 0.57
SHMT1-202ENST00000352886 NRIP2Q9BQI9 281 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 RCL1Q9Y2P8 373 aaKnown RBP18.63■□□□□ 0.57
SHMT1-202ENST00000352886 PCNX2A6NKB5 2137 aa18.63■□□□□ 0.57
SHMT1-202ENST00000352886 SRPXP78539 464 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 GPHA2Q96T91 129 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 WFDC1Q9HC57 220 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 PURGQ9UJV8 347 aaKnown RBP18.62■□□□□ 0.57
SHMT1-202ENST00000352886 UBE2J1Q9Y385 318 aaPredicted RBP18.62■□□□□ 0.57
SHMT1-202ENST00000352886 IGKV1D-13A0A0B4J2D9 117 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 KIR2DS1A0A191URI9 304 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 IGKV1-13P0DP09 117 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 KIR2DS4P43632 304 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 F2RL1P55085 397 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 KIR2DS1Q14954 304 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 SWI5Q1ZZU3 235 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 GAPTQ8N292 157 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 SUMF2Q8NBJ7 301 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 DMBX1Q8NFW5 382 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 WDYHV1Q96HA8 205 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 PARP12Q9H0J9 701 aaKnown RBP18.62■□□□□ 0.57
SHMT1-202ENST00000352886 ZMAT5Q9UDW3 170 aaKnown RBP18.62■□□□□ 0.57
SHMT1-202ENST00000352886 MPC1Q9Y5U8 109 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 ATP23Q9Y6H3 246 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 MED12LQ86YW9 2145 aa18.62■□□□□ 0.57
SHMT1-202ENST00000352886 URB1O60287 2271 aaKnown RBP18.61■□□□□ 0.57
SHMT1-202ENST00000352886 NKX2-6A6NCS4 301 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 ARGFXA6NJG6 315 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 SLC22A20A6NK97 555 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 TRDCB7Z8K6 153 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 RNFT1Q5M7Z0 435 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 FBXW9Q5XUX1 488 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 VASH2Q86V25 355 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 ARV1Q9H2C2 271 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 SPRR3Q9UBC9 169 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 POMT1Q9Y6A1 747 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 BORCS7-ASMTA0A0B4J1R7 106 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 IGKV1-6A0A0C4DH72 117 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 C3orf80F5H4A9 247 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 RNASEK-C17orf49H0YIS7 233 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 GNG3P63215 75 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 ARG2P78540 354 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 NHLH2Q02577 135 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 OR2T2Q6IF00 324 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 MDP1Q86V88 176 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 ZNF573Q86YE8 665 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 ZNF695Q8IW36 515 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 SPAG16Q8N0X2 631 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 BCL2L2Q92843 193 aaPredicted RBP18.61■□□□□ 0.57
SHMT1-202ENST00000352886 PLK3Q9H4B4 646 aa18.61■□□□□ 0.57
SHMT1-202ENST00000352886 TRGV5A0A0B4J1U4 118 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 HS3ST1O14792 307 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 GNMTQ14749 295 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 SPATA46Q5T0L3 261 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 C17orf78Q8N4C9 275 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 FAM212BQ9NTI7 297 aaPredicted RBP18.6■□□□□ 0.57
SHMT1-202ENST00000352886 OR5B21A6NL26 309 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 TUSC2O75896 110 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 CDS2O95674 445 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 CA6P23280 308 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 RND3P61587 244 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 C20orf204Q6ZNR8 217 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 NANOS1Q8WY41 292 aaKnown RBP18.6■□□□□ 0.57
SHMT1-202ENST00000352886 RDH5Q92781 318 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 TMEM56Q96MV1 263 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 SPACA1Q9HBV2 294 aa18.6■□□□□ 0.57
SHMT1-202ENST00000352886 LHX6Q9UPM6 363 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms