RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 KCNK7Q9Y2U2 307 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 KPTNQ9Y664 436 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 A6NIN4 97 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 CEACAM18A8MTB9 384 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 CT62P0C5K7 136 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 DEFA6Q01524 100 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 B3GLCTQ6Y288 498 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 SSX7Q7RTT5 188 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 TSPYL5Q86VY4 417 aaPredicted RBP7.21□□□□□ -1.25
HMGB1-203ENST00000341423 KLHDC1Q8N7A1 406 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 WFDC11Q8NEX6 87 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 OR1L8Q8NGR8 309 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 CLDND2Q8NHS1 167 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 PRRT1Q99946 306 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 SPRR3Q9UBC9 169 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 TMEM56-RWDD3S4R434 201 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 KDM3BQ7LBC6 1761 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 A0A1B0GU03 582 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 RAB29O14966 203 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 CTLA4P16410 223 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 COMPP49747 757 aaPredicted RBP7.21□□□□□ -1.26
HMGB1-203ENST00000341423 SSTP61278 116 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 Q499Y3 187 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF691Q5VV52 312 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 EPGNQ6UW88 154 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 PIP4P2Q8N4L2 257 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 OR13C8Q8NGS7 320 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 NRGNQ92686 78 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 DDOQ99489 341 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 LINC00470Q9BZP3 86 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 BCL2L10Q9HD36 194 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 G6PC2Q9NQR9 355 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 FFAR1O14842 300 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 RAMP1O60894 148 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 RAB3DO95716 219 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 ERP29P30040 261 aaKnown RBP7.21□□□□□ -1.26
HMGB1-203ENST00000341423 MFAP4P55083 255 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 RPL30P62888 115 aaKnown RBP7.21□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF738Q8NE65 137 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 PFN4Q8NHR9 129 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 ARL6Q9H0F7 186 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 RAB22AQ9UL26 194 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 LSM5Q9Y4Y9 91 aaKnown RBP7.21□□□□□ -1.26
HMGB1-203ENST00000341423 SNRNP200O75643 2136 aaKnown RBP7.21□□□□□ -1.26
HMGB1-203ENST00000341423 KANTRA0A1W2PQU2 76 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 OVOL1O14753 267 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF354AO60765 605 aaPredicted RBP7.21□□□□□ -1.26
HMGB1-203ENST00000341423 OR13C7P0DN81 318 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 RPL35AP18077 110 aaKnown RBP7.21□□□□□ -1.26
HMGB1-203ENST00000341423 IGHV1-2P23083 117 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 AARDQ4LEZ3 155 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 TCF23Q7RTU1 214 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 OLIG3Q7RTU3 272 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 CXorf58Q96LI9 332 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 RDH12Q96NR8 316 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 SIGLEC11Q96RL6 698 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 LINC01587Q99440 93 aa7.21□□□□□ -1.26
HMGB1-203ENST00000341423 IGLV3-12A0A075B6K2 115 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF729A6NN14 1252 aaPredicted RBP7.2□□□□□ -1.26
HMGB1-203ENST00000341423 IGHG3P01860 377 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 COX5BP10606 129 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 OR8H3Q8N146 312 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 MDS2Q8NDY4 140 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 HSD3B7Q9H2F3 369 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 SYNPO2LQ9H987 977 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 E7ESA3 106 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 RAMP3O60896 148 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 FSHBP01225 129 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 MRPL19P49406 292 aaKnown RBP7.2□□□□□ -1.26
HMGB1-203ENST00000341423 FMODQ06828 376 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF816Q0VGE8 651 aaPredicted RBP7.2□□□□□ -1.26
HMGB1-203ENST00000341423 SYT8Q8NBV8 401 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 CLEC18CQ8NCF0 446 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 BANF2Q9H503 90 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 MPDZO75970 2070 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 EPG5Q9HCE0 2579 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 IGKV1D-33P01593 117 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 IGKV1-33P01594 117 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 PRKACGP22612 351 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 NFYAP23511 347 aaPredicted RBP7.2□□□□□ -1.26
HMGB1-203ENST00000341423 FAM27BQ5VT28 67 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 DYRK2Q92630 601 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 TYROBPO43914 113 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 GPR107Q5VW38 600 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 GGNBP1Q5YKI7 109 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 OR9Q2Q8NGE9 314 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 OR10Z1Q8NGY1 313 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 S100ZQ8WXG8 99 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 OR14A2Q96R54 314 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 TXN2Q99757 166 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 IDI2-AS1Q9NZ38 188 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 KLK4Q9Y5K2 254 aa7.2□□□□□ -1.26
HMGB1-203ENST00000341423 POLQO75417 2590 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 HOXA3O43365 443 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 CDRT1O95170 752 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 FOXF2Q12947 444 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 CD226Q15762 336 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 OTUD1Q5VV17 481 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-203ENST00000341423 LCN10Q6JVE6 187 aa7.19□□□□□ -1.26
HMGB1-203ENST00000341423 SLC37A3Q8NCC5 494 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms