RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TLE4Q04727 773 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 KIR2DS1Q14954 304 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 CDK10Q15131 360 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 GRK1Q15835 563 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 RSBN1Q5VWQ0 802 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 SLC35E4Q6ICL7 350 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 FAAP20Q6NZ36 180 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF782Q6ZMW2 699 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF554Q86TJ5 538 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 LHFPL1Q86WI0 220 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 BPIFB2Q8N4F0 458 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 OR51S1Q8NGJ8 323 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 PPP1R35Q8TAP8 253 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 PLPPR1Q8TBJ4 325 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 NEU4Q8WWR8 484 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 IGFBPL1Q8WX77 278 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 SNX22Q96L94 193 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 SLC6A7Q99884 636 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 SHARPINQ9H0F6 387 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 RAB1BQ9H0U4 201 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 FAM234AQ9H0X4 552 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 MMP28Q9H239 520 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 NUDT15Q9NV35 164 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 OR14J1Q9UGF5 321 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF230Q9UIE0 474 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 ARFGEF3Q5TH69 2177 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 IGHV1-69-2A0A0G2JMI3 117 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 TMEM30CPA0ZSE6 113 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 INMT-MINDY4F8WBC2 141 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 CYB5R3P00387 301 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 HPXP02790 462 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 CD80P33681 288 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 GMFBP60983 142 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 HOXA4Q00056 320 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 COL10A1Q03692 680 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 CHRFAM7AQ494W8 412 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF660Q6AZW8 331 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 SFRP4Q6FHJ7 346 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF788Q6ZQV5 615 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 GLCCI1Q86VQ1 547 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF561Q8N587 486 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 OR13C8Q8NGS7 320 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 NEK7Q8TDX7 302 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 CHAC2Q8WUX2 184 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 C20orf85Q9H1P6 137 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 PPA2Q9H2U2 334 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 MYOZ1Q9NP98 299 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 DLL4Q9NR61 685 aa12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 RAI1Q7Z5J4 1906 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 HRNRQ86YZ3 2850 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-202ENST00000334448 TRAV38-1A0A0B4J264 116 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 C7orf66A4D0T2 115 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 NPIPB11E5RHQ5 1161 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 K7N7A8 449 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 TNFRSF13BO14836 293 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 MGST3O14880 152 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 RP2O75695 350 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 FCER2P06734 321 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 CTXN2P0C2S0 81 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 OR3A3P47888 321 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 CEBPDP49716 269 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 C20orf204Q6ZNR8 217 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 IDO2Q6ZQW0 420 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 TMEM17Q86X19 198 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 MRGPRFQ96AM1 343 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 COQ2Q96H96 371 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 CABLES2Q9BTV7 478 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 ALX4Q9H161 411 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 CHMP1AQ9HD42 196 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 DCAF16Q9NXF7 216 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 ICE1Q9Y2F5 2266 aa12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 CHD3Q12873 2000 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-202ENST00000334448 PPIAL4EA0A075B759 164 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 A0A0B4J293 547 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 TRDCB7Z8K6 153 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 PPIAL4DF5H284 164 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 HSPB6O14558 160 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 SIGLEC5O15389 551 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 FABP7O15540 132 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 PRAF2O60831 178 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 PEX14O75381 377 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 PMP2P02689 132 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 IFNA6P05013 189 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 H2AFB2P0C5Z0 115 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 PPIAL4FP0DN26 164 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 PLA2G2AP14555 144 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 ERP29P30040 261 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 ARPC4P59998 168 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 HLA-DRB3P79483 266 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 SURF2Q15527 256 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 CR1LQ2VPA4 569 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 DHRS11Q6UWP2 260 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 TGIF2LYQ8IUE0 185 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 ZDHHC22Q8N966 263 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 OR4A4PQ8NGN8 299 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 TERB2Q8NHR7 220 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 MAFIPQ8WZ33 124 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 MED30Q96HR3 178 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 GAFA1Q96PS6 74 aa12.46□□□□□ -0.41
CCDC88C-202ENST00000334448 GINS4Q9BRT9 223 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms