RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 KRTAP27-1Q3LI81 207 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.29□□□□□ -0.6
CPNE1-201ENST00000317677 PRSS54Q6PEW0 395 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 NUFIP2Q7Z417 695 aaKnown RBP11.29□□□□□ -0.6
CPNE1-201ENST00000317677 OR5AS1Q8N127 324 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 SLC22A24Q8N4F4 322 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 HSD17B11Q8NBQ5 300 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 OR52N4Q8NGI2 321 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 DVL3Q92997 716 aaPredicted RBP11.29□□□□□ -0.6
CPNE1-201ENST00000317677 HIST1H2BHQ93079 126 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 SEH1LQ96EE3 360 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 HIST1H2BNQ99877 126 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 HIST1H2BMQ99879 126 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 SLC5A7Q9GZV3 580 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 OPN3Q9H1Y3 402 aaPredicted RBP11.29□□□□□ -0.6
CPNE1-201ENST00000317677 SPACA1Q9HBV2 294 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 CKLFQ9UBR5 152 aa11.29□□□□□ -0.6
CPNE1-201ENST00000317677 A0A087WWC5 75 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 LOC100289279A0A1B0GTE1 492 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 A0A1B0GW64 132 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 A0A1W2PPE2 198 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 ZNF891A8MT65 544 aaPredicted RBP11.28□□□□□ -0.6
CPNE1-201ENST00000317677 DLEU1O43261 78 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 MRPL33O75394 65 aaKnown RBP11.28□□□□□ -0.6
CPNE1-201ENST00000317677 SYNGR4O95473 234 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 AMY2AP04746 511 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 SOD3P08294 240 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 PSG4Q00888 419 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 RAB35Q15286 201 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 SNAI3Q3KNW1 292 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 SAPCD1Q5SSQ6 148 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 C5orf24Q7Z6I8 188 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 OR13C9Q8NGT0 318 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 OR8S1Q8NH09 359 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 PRRT1Q99946 306 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 SUCNR1Q9BXA5 334 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 LINC00470Q9BZP3 86 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 MCTS1Q9ULC4 181 aaKnown RBP11.28□□□□□ -0.6
CPNE1-201ENST00000317677 ATRXP46100 2492 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 OR6C6A6NF89 314 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 H0YIZ8 118 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 M0R135 149 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 TGOLN2O43493 480 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 MMP7P09237 267 aaPredicted RBP11.28□□□□□ -0.6
CPNE1-201ENST00000317677 PPP1R1AQ13522 171 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 MOGAT2Q3SYC2 334 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 CRIP3Q6Q6R5 217 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 Q6ZSR3 168 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 MRPL52Q86TS9 123 aaKnown RBP11.28□□□□□ -0.6
CPNE1-201ENST00000317677 DTD1Q8TEA8 209 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 ZNF799Q96GE5 643 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 PGAM5Q96HS1 289 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 CNTD2Q9H8S5 307 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 TAF9BQ9HBM6 251 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 VSIG4Q9Y279 399 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 MED12LQ86YW9 2145 aa11.28□□□□□ -0.6
CPNE1-201ENST00000317677 MEGF11A6BM72 1044 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 ZNF503-AS2A6NEH8 195 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 CST4P01036 141 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 GAPDHP04406 335 aaKnown RBP11.27□□□□□ -0.61
CPNE1-201ENST00000317677 OR8U9P0C7N5 309 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 EDN3P14138 238 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 RPS2P15880 293 aaKnown RBP11.27□□□□□ -0.61
CPNE1-201ENST00000317677 GNALP38405 381 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 CD200P41217 278 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 IL13RA1P78552 427 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 FAM3AP98173 230 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 C9orf135Q5VTT2 229 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 TMEM268Q5VZI3 342 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 SLC22A25Q6T423 547 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 DOK3Q7L591 496 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 COMMD2Q86X83 199 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 JAGN1Q8N5M9 183 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 OR8U1Q8NH10 309 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 OR2H1Q9GZK4 316 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 CST11Q9H112 138 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 SLC35B3Q9H1N7 401 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 IGKV1-9A0A0C4DH69 117 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 A0A0U1RQV5 110 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 SMCO3A2RU48 225 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 WIPF3A6NGB9 483 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 ZNF736B4DX44 427 aaPredicted RBP11.27□□□□□ -0.61
CPNE1-201ENST00000317677 UMAD1C9J7I0 102 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 AGPAT2O15120 278 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 IGHG3P01860 377 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 CSTBP04080 98 aaKnown RBP11.27□□□□□ -0.61
CPNE1-201ENST00000317677 SNRPCP09234 159 aaKnown RBP11.27□□□□□ -0.61
CPNE1-201ENST00000317677 ZNF25P17030 456 aaPredicted RBP11.27□□□□□ -0.61
CPNE1-201ENST00000317677 GABRR1P24046 479 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 G0S2P27469 103 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 ARF1P84077 181 aaKnown RBP11.27□□□□□ -0.61
CPNE1-201ENST00000317677 GUK1Q16774 197 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 DMRTC1Q5HYR2 192 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 ZNF664Q8N3J9 261 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 NKAIN3Q8N8D7 197 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 OR1F12Q8NHA8 337 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 SSC4DQ8WTU2 575 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 SPACA5Q96QH8 159 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 SSUH2Q9Y2M2 353 aa11.27□□□□□ -0.61
CPNE1-201ENST00000317677 V9GYS6 101 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms