RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 RNF224P0DH78 156 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 CCR5P51681 352 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 EMP1P54849 157 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 PDCD1Q15116 288 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 GBGT1Q8N5D6 347 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 ADAMTS17Q8TE56 1095 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 C10orf35Q96D05 121 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 GPR27Q9NS67 375 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 H0Y8X5 98 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 PITX3O75364 302 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 ZNF250P15622 560 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 FAM209AQ5JX71 171 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 HCSTQ9UBK5 93 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 YBX1P67809 324 aaKnown RBP12.29□□□□□ -0.44
CSPG4-201ENST00000308508 REC114Q7Z4M0 266 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 OR2V2Q96R30 315 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 V9GYH0 126 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 SCN2AQ99250 2005 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 A0A1B0GU03 582 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 IZUMO4Q1ZYL8 232 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 ZNF841Q6ZN19 808 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 H1FOOQ8IZA3 346 aaPredicted RBP12.29□□□□□ -0.44
CSPG4-201ENST00000308508 PAGE4O60829 102 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 FAM219AQ8IW50 185 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 OR2W1Q9Y3N9 320 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 PRR35P0CG20 571 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 ZNF385CQ66K41 422 aaPredicted RBP12.28□□□□□ -0.44
CSPG4-201ENST00000308508 PARM1Q6UWI2 310 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 HBZP02008 142 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 NAT2P11245 290 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 PLPPR5Q32ZL2 321 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 GNG7O60262 68 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 HSPB9Q9BQS6 159 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 OR51M1Q9H341 326 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 DDTP30046 118 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 UQCRFS1P47985 274 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 EWSR1Q01844 656 aaKnown RBP eCLIP12.28□□□□□ -0.44
CSPG4-201ENST00000308508 MRPL58Q14197 206 aaKnown RBP12.28□□□□□ -0.44
CSPG4-201ENST00000308508 NKG7Q16617 165 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 OVCH2Q7RTZ1 564 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 RFESDQ8TAC1 157 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 ZNF502Q8TBZ5 544 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 CDX2Q99626 313 aaPredicted RBP12.28□□□□□ -0.44
CSPG4-201ENST00000308508 CDS2O95674 445 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 CYB5R3P00387 301 aaPredicted RBP12.28□□□□□ -0.44
CSPG4-201ENST00000308508 GPR3P46089 330 aa12.28□□□□□ -0.44
CSPG4-201ENST00000308508 MRPL30Q8TCC3 161 aaKnown RBP12.28□□□□□ -0.44
CSPG4-201ENST00000308508 ESPL1Q14674 2120 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 C17orf47Q8NEP4 570 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 SGMS2Q8NHU3 365 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 PATE1Q8WXA2 126 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 MS4A7Q9GZW8 240 aaPredicted RBP12.27□□□□□ -0.44
CSPG4-201ENST00000308508 C6orf106Q9H6K1 298 aaPredicted RBP12.27□□□□□ -0.44
CSPG4-201ENST00000308508 FMODQ06828 376 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 TWIST1Q15672 202 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 TNXAQ16473 311 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 TCTN1Q2MV58 587 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 RCC2Q9P258 522 aaKnown RBP12.27□□□□□ -0.44
CSPG4-201ENST00000308508 KIAA1217Q5T5P2 1943 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 AKAP11Q9UKA4 1901 aa12.27□□□□□ -0.44
CSPG4-201ENST00000308508 LOC389332A0A1B0GUA5 103 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 HINT1P49773 126 aaPredicted RBP12.27□□□□□ -0.45
CSPG4-201ENST00000308508 ZNF774Q6NX45 483 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 MRGPRDQ8TDS7 321 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 SSMEM1Q8WWF3 244 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 TSPAN32Q96QS1 320 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 TEPPQ6URK8 271 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 DNAJB12Q9NXW2 375 aaKnown RBP12.27□□□□□ -0.45
CSPG4-201ENST00000308508 H7C2G1 150 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 H3BMH7 237 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 TSPO2Q5TGU0 170 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 HIST1H4GQ99525 98 aa12.27□□□□□ -0.45
CSPG4-201ENST00000308508 TMEM136Q6ZRR5 245 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 IL19Q9UHD0 177 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 ASPDHA6ND91 283 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 IGLV3-27P01718 113 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 HMGA2P52926 109 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 FBXL6Q8N531 539 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 FBXO17Q96EF6 278 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 CXXC4Q9H2H0 198 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 PRNDQ9UKY0 176 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 SIGLEC1Q9BZZ2 1709 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 PRKNO60260 465 aaPredicted RBP12.26□□□□□ -0.45
CSPG4-201ENST00000308508 SBK3P0C264 359 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 SLC25A30Q5SVS4 291 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 SPANXN1Q5VSR9 72 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 K7EQS6 105 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 CRYABP02511 175 aaKnown RBP12.26□□□□□ -0.45
CSPG4-201ENST00000308508 MMP9P14780 707 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 ERVFRD-1P60508 538 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 ZG16BQ96DA0 208 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 CHRNA10Q9GZZ6 450 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 CRYBG1Q9Y4K1 1723 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 CDKN2AP42771 156 aaKnown RBP12.26□□□□□ -0.45
CSPG4-201ENST00000308508 HOXA4Q00056 320 aaPredicted RBP12.26□□□□□ -0.45
CSPG4-201ENST00000308508 TRIP12Q14669 1992 aaPredicted RBP12.26□□□□□ -0.45
CSPG4-201ENST00000308508 C1QTNF12Q5T7M4 302 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 PWWP2BQ6NUJ5 590 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 CES1P1Q9UKY3 287 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 SSC5DA1L4H1 1573 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms