RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SLC33A1O00400 549 aaPredicted RBP11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 DEGS1O15121 323 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 ISG15P05161 165 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 EPHA2P29317 976 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 C21orf33P30042 268 aaPredicted RBP11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 RAB25P57735 213 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 C17orf58Q2M2W7 97 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 C18orf65Q6ZTR6 163 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 KCTD20Q7Z5Y7 419 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 STPG2Q8N412 459 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 DRAM1Q8N682 238 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 CCDC197Q8NCU1 140 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 RFKQ969G6 155 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 FGGYQ96C11 551 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 RAX2Q96IS3 184 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 LINC00574Q9H8X3 128 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 GNG8Q9UK08 70 aa11.65□□□□□ -0.54
CCDC88B-201ENST00000301897 A0A1W2PPI3 338 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 MITFO75030 526 aaPredicted RBP11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 DBTP11182 482 aaKnown RBP11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 GLP1RP43220 463 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 KIR3DL2P43630 455 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 ISL1P61371 349 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 ATXN7L3Q14CW9 347 aaPredicted RBP11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 PNLIPRP3Q17RR3 467 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 CXorf66Q5JRM2 361 aaPredicted RBP11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 Q6P435 159 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 RDH10Q8IZV5 341 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 OR10A7Q8NGE5 316 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 OR51T1Q8NGJ9 327 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 OR2G2Q8NGZ5 317 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 MBOAT4Q96T53 435 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 CALYQ9NYX4 217 aa11.64□□□□□ -0.55
CCDC88B-201ENST00000301897 IGKV1-12A0A0C4DH73 117 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 IL1AP01583 271 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 IGKV1D-12P01611 117 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 RPSAP08865 295 aaKnown RBP11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 CGB3P0DN86 165 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 CGB7P0DN87 165 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 FOXE3Q13461 319 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 KIR2DS1Q14954 304 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 KDM4DQ6B0I6 523 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 FDX2Q6P4F2 183 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 TGIF2LXQ8IUE1 241 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 OR10X1Q8NGY0 326 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 RFT1Q96AA3 541 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 BARHL1Q9BZE3 327 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 ING3Q9NXR8 418 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 IDI2-AS1Q9NZ38 188 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 PSG11Q9UQ72 335 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 POMPQ9Y244 141 aa11.63□□□□□ -0.55
CCDC88B-201ENST00000301897 MEIKINA0A087WXM9 373 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 G3V2T6 193 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 GYG2O15488 501 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 RRP9O43818 475 aaKnown RBP11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 IGKV1D-33P01593 117 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 IGKV1-33P01594 117 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 ELANEP08246 267 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 CHATP28329 748 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 CDX1P47902 265 aaPredicted RBP11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 KCNJ3P48549 501 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 MTNR1BP49286 362 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 CCR9P51686 369 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 PAX5Q02548 391 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 EBI3Q14213 229 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 HNF4GQ14541 408 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 DNAL1Q4LDG9 190 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 PAN3Q58A45 887 aaKnown RBP11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 NKAPLQ5M9Q1 402 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 ZDHHC13Q8IUH4 622 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 RNF152Q8N8N0 203 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 Q8NFD4 153 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 OR8J1Q8NGP2 316 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 OR13C3Q8NGS6 347 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 RNF166Q96A37 237 aaPredicted RBP11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 CPNE2Q96FN4 548 aaPredicted RBP11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 OSBPL10Q9BXB5 764 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 PPIL3Q9H2H8 161 aaKnown RBP11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 DCLRE1BQ9H816 532 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 LIN7CQ9NUP9 197 aaKnown RBP11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 KIF25Q9UIL4 384 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 LINC00527Q9UJ94 153 aa11.62□□□□□ -0.55
CCDC88B-201ENST00000301897 SEC14L6B5MCN3 397 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 MPZL2O60487 215 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 APOL3O95236 402 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 GAPDHP04406 335 aaKnown RBP11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 RPLP1P05386 114 aaKnown RBP11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 TMEM225BP0DP42 221 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 ECI1P42126 302 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 GPR12P47775 334 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 INSL3P51460 131 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 LUMP51884 338 aaPredicted RBP11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 ZNF816Q0VGE8 651 aaPredicted RBP11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 GPR50Q13585 617 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 CDK5R1Q15078 307 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 TP53I3Q53FA7 332 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 LCNL1Q6ZST4 164 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 IZUMO1Q8IYV9 350 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 OR5D18Q8NGL1 313 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 OR13C9Q8NGT0 318 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms