RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 E5RGE8 158 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 GLAP06280 429 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 KCNJ3P48549 501 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 RND3P61587 244 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 IGF2-ASQ6U949 168 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 UQCC3Q6UW78 93 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 MEX3BQ6ZN04 569 aaKnown RBP20.43■□□□□ 0.86
TRIM54-201ENST00000296098 LDLRAD3Q86YD5 345 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 RDH5Q92781 318 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 RHOFQ9HBH0 211 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 TAF9BQ9HBM6 251 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 ZFP57Q9NU63 452 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 FBXL17Q9UF56 701 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 NSG2Q9Y328 171 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 TRBV6-6A0A0A6YYG2 114 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 LRP5LA4QPB2 252 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 HS3ST1O14792 307 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 TUSC2O75896 110 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 GABRA6Q16445 453 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 SPIN3Q5JUX0 258 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 SLC35G3Q8N808 338 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 CNEP1R1Q8N9A8 125 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 BOLLQ8N9W6 283 aaKnown RBP20.42■□□□□ 0.86
TRIM54-201ENST00000296098 BPIFCQ8NFQ6 507 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 TMEM222Q9H0R3 208 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 IFT22Q9H7X7 185 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 AMDHD2Q9Y303 409 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 SPEF1Q9Y4P9 236 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 TTC28Q96AY4 2481 aa20.42■□□□□ 0.86
TRIM54-201ENST00000296098 GPR31O00270 319 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 FAM157CP0CG43 387 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 IGFBP7Q16270 282 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 EIF5AL1Q6IS14 154 aaKnown RBP20.41■□□□□ 0.86
TRIM54-201ENST00000296098 INO80CQ6PI98 192 aaPredicted RBP20.41■□□□□ 0.86
TRIM54-201ENST00000296098 TBC1D26Q86UD7 250 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 ARL11Q969Q4 196 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 MS4A7Q9GZW8 240 aaPredicted RBP20.41■□□□□ 0.86
TRIM54-201ENST00000296098 GLS2Q9UI32 602 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 FAM186AA6NE01 2351 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 IGKV1-6A0A0C4DH72 117 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 WISP2O76076 250 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 GAPDHP04406 335 aaKnown RBP20.41■□□□□ 0.86
TRIM54-201ENST00000296098 ERVS71-1P61550 626 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 TMEM268Q5VZI3 342 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 ZNF818PQ6ZRF7 136 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 WDR86Q86TI4 376 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 ADAT1Q9BUB4 502 aaKnown RBP20.41■□□□□ 0.86
TRIM54-201ENST00000296098 DLL3Q9NYJ7 618 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 LPAR3Q9UBY5 353 aa20.41■□□□□ 0.86
TRIM54-201ENST00000296098 CELSR3Q9NYQ7 3312 aa20.4■□□□□ 0.86
TRIM54-201ENST00000296098 ESPL1Q14674 2120 aa20.4■□□□□ 0.86
TRIM54-201ENST00000296098 CNOT4O95628 575 aaKnown RBP20.4■□□□□ 0.86
TRIM54-201ENST00000296098 RCC1P18754 421 aaPredicted RBP20.4■□□□□ 0.86
TRIM54-201ENST00000296098 DEFB109BQ30KR1 87 aa20.4■□□□□ 0.86
TRIM54-201ENST00000296098 OR52M1Q8NGK5 317 aa20.4■□□□□ 0.86
TRIM54-201ENST00000296098 SARAFQ96BY9 339 aa20.4■□□□□ 0.86
TRIM54-201ENST00000296098 IGKV1D-13A0A0B4J2D9 117 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 ZNF705EA8MWA4 302 aaPredicted RBP20.39■□□□□ 0.86
TRIM54-201ENST00000296098 APOC3P02656 99 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 IGKV1-13P0DP09 117 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 RAC2P15153 192 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 ZNF44P15621 663 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 NOVA1P51513 510 aaKnown RBP20.39■□□□□ 0.86
TRIM54-201ENST00000296098 NUBP1P53384 320 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 TMEM33P57088 247 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 C20orf204Q6ZNR8 217 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 Q8IYB0 196 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 GAPTQ8N292 157 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 SLC25A40Q8TBP6 338 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 NARS2Q96I59 477 aaKnown RBP20.39■□□□□ 0.86
TRIM54-201ENST00000296098 POLDIP2Q9Y2S7 368 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 UBE2J1Q9Y385 318 aaPredicted RBP20.39■□□□□ 0.86
TRIM54-201ENST00000296098 ZNF318Q5VUA4 2279 aa20.39■□□□□ 0.86
TRIM54-201ENST00000296098 PTPRBP23467 1997 aa20.39■□□□□ 0.85
TRIM54-201ENST00000296098 C3orf80F5H4A9 247 aa20.39■□□□□ 0.85
TRIM54-201ENST00000296098 DEGS1O15121 323 aa20.39■□□□□ 0.85
TRIM54-201ENST00000296098 HOXC12P31275 282 aa20.39■□□□□ 0.85
TRIM54-201ENST00000296098 HLA-DRB3P79483 266 aa20.39■□□□□ 0.85
TRIM54-201ENST00000296098 ZNF880Q6PDB4 577 aa20.39■□□□□ 0.85
TRIM54-201ENST00000296098 C9orf106Q8NAJ2 232 aa20.39■□□□□ 0.85
TRIM54-201ENST00000296098 SCCPDHQ8NBX0 429 aa20.39■□□□□ 0.85
TRIM54-201ENST00000296098 NUDT19A8MXV4 375 aa20.38■□□□□ 0.85
TRIM54-201ENST00000296098 JTBO76095 146 aa20.38■□□□□ 0.85
TRIM54-201ENST00000296098 COX5AP20674 150 aa20.38■□□□□ 0.85
TRIM54-201ENST00000296098 FAM76BQ5HYJ3 339 aa20.38■□□□□ 0.85
TRIM54-201ENST00000296098 Q6P435 159 aa20.38■□□□□ 0.85
TRIM54-201ENST00000296098 OR4A4PQ8NGN8 299 aa20.38■□□□□ 0.85
TRIM54-201ENST00000296098 OR1J1Q8NGS3 322 aa20.38■□□□□ 0.85
TRIM54-201ENST00000296098 TMEM56Q96MV1 263 aa20.38■□□□□ 0.85
TRIM54-201ENST00000296098 TMEM56-RWDD3S4R434 201 aa20.38■□□□□ 0.85
TRIM54-201ENST00000296098 IQCF6A8MYZ5 107 aa20.37■□□□□ 0.85
TRIM54-201ENST00000296098 ST8SIA3O43173 380 aa20.37■□□□□ 0.85
TRIM54-201ENST00000296098 HOXB1P14653 301 aaPredicted RBP20.37■□□□□ 0.85
TRIM54-201ENST00000296098 KIR2DL2P43627 348 aaPredicted RBP20.37■□□□□ 0.85
TRIM54-201ENST00000296098 UCP2P55851 309 aa20.37■□□□□ 0.85
TRIM54-201ENST00000296098 BTN1A1Q13410 526 aa20.37■□□□□ 0.85
TRIM54-201ENST00000296098 VWA1Q6PCB0 445 aa20.37■□□□□ 0.85
TRIM54-201ENST00000296098 OR4D5Q8NGN0 318 aa20.37■□□□□ 0.85
TRIM54-201ENST00000296098 WNT2BQ93097 391 aa20.37■□□□□ 0.85
TRIM54-201ENST00000296098 SMIM3Q9BZL3 60 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms