RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 F8VWA3 439 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 MSTNO14793 375 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 OR5H8P0DN80 308 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 PRKACAP17612 351 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 SERPINF1P36955 418 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 TDGF1P3P51864 188 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 NAAAQ02083 359 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 DAZAP2Q15038 168 aaPredicted RBP13.05□□□□□ -0.32
SF3B4-201ENST00000271628 C3orf36Q3SXR2 165 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 ZNF718Q3SXZ3 478 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 DHRS11Q6UWP2 260 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 FAM58AQ8N1B3 248 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 BATF2Q8N1L9 274 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 RPRMLQ8N4K4 120 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 CISD2Q8N5K1 135 aaKnown RBP13.05□□□□□ -0.32
SF3B4-201ENST00000271628 Q8NA96 180 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 OR8G5Q8NG78 346 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 PIK3IP1Q96FE7 263 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 ZNF2Q9BSG1 426 aaPredicted RBP13.05□□□□□ -0.32
SF3B4-201ENST00000271628 MS4A7Q9GZW8 240 aaPredicted RBP13.05□□□□□ -0.32
SF3B4-201ENST00000271628 DECR2Q9NUI1 292 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.04□□□□□ -0.32
SF3B4-201ENST00000271628 C13orf42A0A1B0GVH6 325 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 GLAP06280 429 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 CTRB1P17538 263 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 GCH1P30793 250 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 OR8G1Q15617 311 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 CTRB2Q6GPI1 263 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 GTF3AQ92664 365 aaKnown RBP13.04□□□□□ -0.32
SF3B4-201ENST00000271628 MARC2Q969Z3 335 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 RIMS4Q9H426 269 aaPredicted RBP13.04□□□□□ -0.32
SF3B4-201ENST00000271628 C14orf166Q9Y224 244 aaKnown RBP13.04□□□□□ -0.32
SF3B4-201ENST00000271628 DSPP15924 2871 aaKnown RBP13.04□□□□□ -0.32
SF3B4-201ENST00000271628 APC2O95996 2303 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 ATMQ13315 3056 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 IGHV2OR16-5A0A0B4J2B6 119 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 SFT2D2O95562 160 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 GLI4P10075 376 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 TPT1P13693 172 aaKnown RBP13.04□□□□□ -0.32
SF3B4-201ENST00000271628 KITLGP21583 273 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 FAM122CQ6P4D5 195 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 Q6ZS49 121 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 MUCL1Q96DR8 90 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 RTBDNQ9BSG5 229 aaPredicted RBP13.04□□□□□ -0.32
SF3B4-201ENST00000271628 IFT22Q9H7X7 185 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 PURGQ9UJV8 347 aaKnown RBP13.04□□□□□ -0.32
SF3B4-201ENST00000271628 BSNQ9UPA5 3926 aa13.04□□□□□ -0.32
SF3B4-201ENST00000271628 PGAM2P15259 253 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 RBM39Q14498 530 aaKnown RBP13.03□□□□□ -0.32
SF3B4-201ENST00000271628 MBNL2Q5VZF2 373 aaKnown RBP13.03□□□□□ -0.32
SF3B4-201ENST00000271628 DOLPP1Q86YN1 238 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 SCCPDHQ8NBX0 429 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 DCUN1D4Q92564 292 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 DYRK2Q92630 601 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 ACACAQ13085 2346 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 A8MXE2 369 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 FGF16O43320 207 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 ACAA1P09110 424 aaPredicted RBP13.03□□□□□ -0.32
SF3B4-201ENST00000271628 MPV17P39210 176 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 SLC22A25Q6T423 547 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 CLEC18BQ6UXF7 455 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 BPIFCQ8NFQ6 507 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 TMEM230Q96A57 120 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 S100PBPQ96BU1 408 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 HS3ST6Q96QI5 342 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 AIFM2Q9BRQ8 373 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 RNF126Q9BV68 326 aa13.03□□□□□ -0.32
SF3B4-201ENST00000271628 FAM221AA4D161 298 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 MPTX1A8MV57 137 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 NUDT19A8MXV4 375 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 TOR1AO14656 332 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 RHBDL1O75783 438 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 LYL1P12980 280 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 ZNF154Q13106 437 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 ALKBH6Q3KRA9 238 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 GFRALQ6UXV0 394 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 BAP18Q8IXM2 172 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 LRRC46Q96FV0 321 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 USB1Q9BQ65 265 aaKnown RBP13.02□□□□□ -0.33
SF3B4-201ENST00000271628 PRELID1Q9Y255 219 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 SPTBN2O15020 2390 aa13.02□□□□□ -0.33
SF3B4-201ENST00000271628 TIMM8AO60220 97 aaPredicted RBP13.01□□□□□ -0.33
SF3B4-201ENST00000271628 NAPSAO96009 420 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 CTSDP07339 412 aaPredicted RBP13.01□□□□□ -0.33
SF3B4-201ENST00000271628 GLRA1P23415 457 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 GLP1RP43220 463 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 FABP6P51161 128 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 ERVK11-1P61568 191 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 ESPL1Q14674 2120 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 WDR86Q86TI4 376 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 NEK7Q8TDX7 302 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 RNF141Q8WVD5 230 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 ZNF488Q96MN9 340 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 IL36RNQ9UBH0 155 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 PCDHB10Q9UN67 800 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 CDIPTO14735 213 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 CRYAAP02489 173 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 PGA5P0DJD9 388 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 DEFA5Q01523 94 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 MZT1Q08AG7 82 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms