RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 MPV17LQ2QL34 196 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 TUSC5Q8IXB3 177 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 HSD17B11Q8NBQ5 300 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 HPSE2Q8WWQ2 592 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 TAAR9Q96RI9 348 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 STRADBQ9C0K7 418 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 LHX6Q9UPM6 363 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 TNRC6AQ8NDV7 1962 aaKnown RBP14.09□□□□□ -0.15
HOXD3-201ENST00000249440 NKX2-6A6NCS4 301 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 NEURL1O76050 574 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 CCL2P13500 99 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 ZNF266Q14584 549 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 MKXQ8IYA7 352 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 USB1Q9BQ65 265 aaKnown RBP14.09□□□□□ -0.15
HOXD3-201ENST00000249440 SH3BGRL3Q9H299 93 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 CALHM2Q9HA72 323 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 KIR2DS1A0A191URI9 304 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 COLCA2A8K830 154 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 TRAPPC2LH3BP13 241 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 SYNGR4O95473 234 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 SCTP09683 121 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 KIR2DS4P43632 304 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 FHITP49789 147 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 AKR1D1P51857 326 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 CLDN18P56856 261 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 KIR2DS1Q14954 304 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 ABHD17BQ5VST6 288 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 C15orf54Q8N8G6 183 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 DCHS1Q96JQ0 3298 aa14.09□□□□□ -0.15
HOXD3-201ENST00000249440 ZNF732B4DXR9 585 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 CTXN2P0C2S0 81 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 AKIRIN2Q53H80 203 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF818PQ6ZRF7 136 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 KDF1Q8NAX2 398 aaPredicted RBP14.08□□□□□ -0.16
HOXD3-201ENST00000249440 SNIP1Q8TAD8 396 aaKnown RBP14.08□□□□□ -0.16
HOXD3-201ENST00000249440 SIGLEC12Q96PQ1 595 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 HIST1H2AAQ96QV6 131 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 PBDC1Q9BVG4 233 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 SCRT1Q9BWW7 348 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 MTCH1Q9NZJ7 389 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 DUXBA0A1W2PPF3 345 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 CELA3AP09093 270 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 JMJD7P0C870 316 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 SELENOHQ8IZQ5 122 aaKnown RBP14.08□□□□□ -0.16
HOXD3-201ENST00000249440 GAPTQ8N292 157 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 OR5A2Q8NGI9 324 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 NEK7Q8TDX7 302 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 ABHD14BQ96IU4 210 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 PRRG4Q9BZD6 226 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 FGF23Q9GZV9 251 aaPredicted RBP14.08□□□□□ -0.16
HOXD3-201ENST00000249440 ARRDC1-AS1Q9H2J1 176 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 RNF122Q9H9V4 155 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 RPS10P5Q9NQ39 176 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 ATP23Q9Y6H3 246 aa14.08□□□□□ -0.16
HOXD3-201ENST00000249440 ZFHX2Q9C0A1 2572 aaPredicted RBP14.07□□□□□ -0.16
HOXD3-201ENST00000249440 FAM24AA6NFZ4 105 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 C1QL1O75973 258 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 FOLR2P14207 255 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 ARR3P36575 388 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 RPL35P42766 123 aaKnown RBP14.07□□□□□ -0.16
HOXD3-201ENST00000249440 LFNGQ8NES3 379 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 DDA1Q9BW61 102 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 SLC25A31Q9H0C2 315 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 C11orf1Q9H5F2 150 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 PLEKHF2Q9H8W4 249 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 SLC22A20A6NK97 555 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 POLR2GP62487 172 aaKnown RBP eCLIP14.07□□□□□ -0.16
HOXD3-201ENST00000249440 RAB1AP62820 205 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 TMEM182Q6ZP80 229 aaPredicted RBP14.07□□□□□ -0.16
HOXD3-201ENST00000249440 CMTM1Q8IZ96 169 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 SUMF1Q8NBK3 374 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 APH1AQ96BI3 265 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 HS3ST6Q96QI5 342 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 RIMS4Q9H426 269 aaPredicted RBP14.07□□□□□ -0.16
HOXD3-201ENST00000249440 PLK3Q9H4B4 646 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 OPA3Q9H6K4 179 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 CRIM1Q9NZV1 1036 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 ABI3Q9P2A4 366 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 OTOGLQ3ZCN5 2332 aa14.07□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF724A8MTY0 619 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 HSPB6O14558 160 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 SS18L1O75177 396 aaPredicted RBP14.06□□□□□ -0.16
HOXD3-201ENST00000249440 TUSC2O75896 110 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 VAMP2P63027 116 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 HERPUD1Q15011 391 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 ETV3LQ6ZN32 361 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 C2CD4CQ8TF44 421 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 C14orf79Q96F83 325 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 SPRY4Q9C004 299 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 SPACA1Q9HBV2 294 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 LYRM2Q9NU23 88 aaPredicted RBP14.06□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF292O60281 2723 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 DNAJC13O75165 2243 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 CLEC18AA5D8T8 446 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 ZNF503-AS2A6NEH8 195 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 PITX3O75364 302 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 VDAC1P21796 283 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 LMO1P25800 156 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 MAGEA5P43359 124 aa14.06□□□□□ -0.16
HOXD3-201ENST00000249440 ASCL1P50553 236 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms