RNA–Protein interactions for RNA: ENST00000244303.10

HIF3A-202, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,250 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-202ENST00000244303 SIGLEC12Q96PQ1 595 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 HES7Q9BYE0 225 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 CALHM2Q9HA72 323 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 PLSCR2Q9NRY7 297 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 LUZP4Q9P127 313 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 IL36RNQ9UBH0 155 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 GPR179Q6PRD1 2367 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 ZNF503-AS2A6NEH8 195 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 NEURL1O76050 574 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 MT-CO3P00414 261 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 S100A8P05109 93 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 LHX2P50458 406 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 ASCL1P50553 236 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 GNMTQ14749 295 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 TMEM164Q5U3C3 297 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 RBMS3Q6XE24 437 aaKnown RBP12.35□□□□□ -0.43
HIF3A-202ENST00000244303 DPPA2Q7Z7J5 298 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 TBC1D26Q86UD7 250 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 OR2M7Q8NG81 312 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 PRRG4Q9BZD6 226 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 LINC00470Q9BZP3 86 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 TMEM222Q9H0R3 208 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 ZNF703Q9H7S9 590 aaPredicted RBP12.35□□□□□ -0.43
HIF3A-202ENST00000244303 RNF122Q9H9V4 155 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 FAM86C1Q9NVL1 165 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 KPTNQ9Y664 436 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 ZNF407Q9C0G0 2248 aa12.35□□□□□ -0.43
HIF3A-202ENST00000244303 ARHGAP21Q5T5U3 1957 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 ESPL1Q14674 2120 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 DNAJC13O75165 2243 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A10PA6NDY2 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A18PA6NE21 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A16PA6NEW6 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A20PA6NIJ5 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A8PA6NJQ4 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A7PA6NKC0 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A22PA8MWA6 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A12PA8MX19 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A5PA8MXJ8 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A23PA8MXZ1 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 LINC00587B1AMM8 73 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 TRDCB7Z8K6 153 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 HSPB6O14558 160 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 SCTP09683 121 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A15PP0C7V4 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A13PP0C7W8 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A14PP0C7W9 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM90A24PP0C7X0 464 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 SMIM6P0DI80 62 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 GUK1Q16774 197 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 SPIN3Q5JUX0 258 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 SUMF1Q8NBK3 374 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 BOD1Q96IK1 185 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 GPHA2Q96T91 129 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 SCRT1Q9BWW7 348 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 GPR87Q9BY21 358 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 Q9N2K0 584 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 R4GN57 208 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 MED19A0JLT2 244 aaPredicted RBP12.34□□□□□ -0.43
HIF3A-202ENST00000244303 PRH1P02810 166 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 SNRNP70P08621 437 aaKnown RBP12.34□□□□□ -0.43
HIF3A-202ENST00000244303 ZNF14P17017 642 aaPredicted RBP12.34□□□□□ -0.43
HIF3A-202ENST00000244303 CLDN18P56856 261 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FGF12P61328 243 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 EWSR1Q01844 656 aaKnown RBP eCLIP12.34□□□□□ -0.43
HIF3A-202ENST00000244303 KRBOX4Q5JUW0 171 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 ZNF818PQ6ZRF7 136 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 Q6ZS49 121 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 MRPL21Q7Z2W9 205 aaKnown RBP12.34□□□□□ -0.43
HIF3A-202ENST00000244303 ZDHHC23Q8IYP9 409 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM185AQ8N0U4 392 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 POM121Q96HA1 1249 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 FAM173AQ9BQD7 235 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 NIT2Q9NQR4 276 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 C19orf12Q9NSK7 152 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 MTCH1Q9NZJ7 389 aa12.34□□□□□ -0.43
HIF3A-202ENST00000244303 UBE2J1Q9Y385 318 aaPredicted RBP12.34□□□□□ -0.43
HIF3A-202ENST00000244303 C21orf140B9A014 251 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 M0R036 132 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 CDS2O95674 445 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 NAPSAO96009 420 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 UCP2P55851 309 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 SRPXP78539 464 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 HERPUD1Q15011 391 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 CEACAM21Q3KPI0 293 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 ZNF695Q8IW36 515 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 ZNF561Q8N587 486 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 COMMD1Q8N668 190 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 HIST1H2BAQ96A08 127 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 EIF5A2Q9GZV4 153 aaKnown RBP12.33□□□□□ -0.44
HIF3A-202ENST00000244303 C11orf1Q9H5F2 150 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 DOCK7Q96N67 2140 aa12.33□□□□□ -0.44
HIF3A-202ENST00000244303 FAM24AA6NFZ4 105 aa12.32□□□□□ -0.44
HIF3A-202ENST00000244303 C5orf52A6NGY3 159 aa12.32□□□□□ -0.44
HIF3A-202ENST00000244303 FAM166BA8MTA8 275 aa12.32□□□□□ -0.44
HIF3A-202ENST00000244303 ZNF732B4DXR9 585 aa12.32□□□□□ -0.44
HIF3A-202ENST00000244303 TK1P04183 234 aa12.32□□□□□ -0.44
HIF3A-202ENST00000244303 ZNF44P15621 663 aa12.32□□□□□ -0.44
HIF3A-202ENST00000244303 POLR2GP62487 172 aaKnown RBP eCLIP12.32□□□□□ -0.44
HIF3A-202ENST00000244303 HMGN3Q15651 99 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms