RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 FRAT1Q92837 279 aaPredicted RBP24.05■■□□□ 1.44
CLN3-260ENST00000637578 GNAI3P08754 354 aa24.04■■□□□ 1.44
CLN3-260ENST00000637578 HSPA1AP0DMV8 641 aaKnown RBP24.04■■□□□ 1.44
CLN3-260ENST00000637578 HSPA1BP0DMV9 641 aaKnown RBP24.04■■□□□ 1.44
CLN3-260ENST00000637578 FGFR2P21802 821 aa24.04■■□□□ 1.44
CLN3-260ENST00000637578 ZNF408Q9H9D4 720 aa24.04■■□□□ 1.44
CLN3-260ENST00000637578 HDAC9Q9UKV0 1011 aa24.04■■□□□ 1.44
CLN3-260ENST00000637578 CIAO1O76071 339 aa24.03■■□□□ 1.44
CLN3-260ENST00000637578 ZKSCAN2Q63HK3 967 aa24.03■■□□□ 1.44
CLN3-260ENST00000637578 MTMR14Q8NCE2 650 aa24.03■■□□□ 1.44
CLN3-260ENST00000637578 CAPNS2Q96L46 248 aa24.03■■□□□ 1.44
CLN3-260ENST00000637578 ECE1P42892 770 aa24.02■■□□□ 1.44
CLN3-260ENST00000637578 MTX1Q13505 466 aa24.02■■□□□ 1.44
CLN3-260ENST00000637578 PUM3Q15397 648 aaKnown RBP24.01■■□□□ 1.43
CLN3-260ENST00000637578 CYP4F22Q6NT55 531 aa24.01■■□□□ 1.43
CLN3-260ENST00000637578 COPRSQ9NQ92 184 aa24.01■■□□□ 1.43
CLN3-260ENST00000637578 CLUAP1Q96AJ1 413 aa24■■□□□ 1.43
CLN3-260ENST00000637578 CDCA5Q96FF9 252 aa24■■□□□ 1.43
CLN3-260ENST00000637578 GBA2Q9HCG7 927 aaPredicted RBP24■■□□□ 1.43
CLN3-260ENST00000637578 CAVIN4Q5BKX8 364 aa23.99■■□□□ 1.43
CLN3-260ENST00000637578 WBP1LQ9NX94 342 aa23.99■■□□□ 1.43
CLN3-260ENST00000637578 JAG2Q9Y219 1238 aa23.99■■□□□ 1.43
CLN3-260ENST00000637578 IFIT1P09914 478 aaKnown RBP23.98■■□□□ 1.43
CLN3-260ENST00000637578 BCAMP50895 628 aa23.98■■□□□ 1.43
CLN3-260ENST00000637578 MFSD14BQ5SR56 506 aa23.98■■□□□ 1.43
CLN3-260ENST00000637578 VPS37DQ86XT2 251 aa23.98■■□□□ 1.43
CLN3-260ENST00000637578 TMEM57Q8N5G2 664 aa23.98■■□□□ 1.43
CLN3-260ENST00000637578 C2orf69Q8N8R5 385 aa23.98■■□□□ 1.43
CLN3-260ENST00000637578 LPIN2Q92539 896 aa23.98■■□□□ 1.43
CLN3-260ENST00000637578 THSD7BQ9C0I4 1608 aa23.97■■□□□ 1.43
CLN3-260ENST00000637578 IL15P40933 162 aaPredicted RBP23.97■■□□□ 1.43
CLN3-260ENST00000637578 HUNKP57058 714 aa23.97■■□□□ 1.43
CLN3-260ENST00000637578 DLGAP5Q15398 846 aa23.97■■□□□ 1.43
CLN3-260ENST00000637578 SIL1Q9H173 461 aa23.97■■□□□ 1.43
CLN3-260ENST00000637578 PA2G4Q9UQ80 394 aaKnown RBP23.97■■□□□ 1.43
CLN3-260ENST00000637578 MAP2K2P36507 400 aa23.96■■□□□ 1.43
CLN3-260ENST00000637578 PAXIP1Q6ZW49 1069 aaPredicted RBP23.96■■□□□ 1.43
CLN3-260ENST00000637578 CEP126Q9P2H0 1117 aa23.96■■□□□ 1.43
CLN3-260ENST00000637578 SCAF8Q9UPN6 1271 aaKnown RBP23.96■■□□□ 1.43
CLN3-260ENST00000637578 F8W031 263 aaPredicted RBP23.95■■□□□ 1.43
CLN3-260ENST00000637578 GNAI2P04899 355 aa23.95■■□□□ 1.43
CLN3-260ENST00000637578 MAP2K1Q02750 393 aaPredicted RBP23.95■■□□□ 1.43
CLN3-260ENST00000637578 SPDYE2BA6NHP3 402 aa23.95■■□□□ 1.42
CLN3-260ENST00000637578 SRGAP3O43295 1099 aa23.95■■□□□ 1.42
CLN3-260ENST00000637578 SPDYE6P0CI01 402 aa23.95■■□□□ 1.42
CLN3-260ENST00000637578 SLC5A1P13866 664 aa23.95■■□□□ 1.42
CLN3-260ENST00000637578 FKBP1BP68106 108 aa23.95■■□□□ 1.42
CLN3-260ENST00000637578 CFAP100Q494V2 611 aa23.95■■□□□ 1.42
CLN3-260ENST00000637578 APOBEC3FQ8IUX4 373 aaKnown RBP23.95■■□□□ 1.42
CLN3-260ENST00000637578 IQSEC3Q9UPP2 1182 aaPredicted RBP23.95■■□□□ 1.42
CLN3-260ENST00000637578 PCDHAC2Q9Y5I4 1007 aa23.95■■□□□ 1.42
CLN3-260ENST00000637578 FOXN1O15353 648 aa23.94■■□□□ 1.42
CLN3-260ENST00000637578 PRMT6Q96LA8 375 aaPredicted RBP23.94■■□□□ 1.42
CLN3-260ENST00000637578 DZIP1LQ8IYY4 767 aaKnown RBP23.93■■□□□ 1.42
CLN3-260ENST00000637578 TBC1D22AQ8WUA7 517 aa23.93■■□□□ 1.42
CLN3-260ENST00000637578 SERPINA10Q9UK55 444 aa23.93■■□□□ 1.42
CLN3-260ENST00000637578 ZBTB22O15209 634 aa23.92■■□□□ 1.42
CLN3-260ENST00000637578 AOC2O75106 756 aa23.92■■□□□ 1.42
CLN3-260ENST00000637578 RLBP1P12271 317 aa23.92■■□□□ 1.42
CLN3-260ENST00000637578 ATP2B3Q16720 1220 aa23.92■■□□□ 1.42
CLN3-260ENST00000637578 COL13A1Q5TAT6 717 aaPredicted RBP23.92■■□□□ 1.42
CLN3-260ENST00000637578 PRAMEF18Q5VWM3 479 aa23.92■■□□□ 1.42
CLN3-260ENST00000637578 RGMBQ6NW40 437 aa23.92■■□□□ 1.42
CLN3-260ENST00000637578 TTF2Q9UNY4 1162 aaKnown RBP23.92■■□□□ 1.42
CLN3-260ENST00000637578 FAM155AB1AL88 458 aaPredicted RBP23.91■■□□□ 1.42
CLN3-260ENST00000637578 GRM1Q13255 1194 aa23.91■■□□□ 1.42
CLN3-260ENST00000637578 GRIK5Q16478 980 aa23.91■■□□□ 1.42
CLN3-260ENST00000637578 AOX1Q06278 1338 aa23.9■■□□□ 1.42
CLN3-260ENST00000637578 FRAT2O75474 233 aaPredicted RBP23.9■■□□□ 1.42
CLN3-260ENST00000637578 CHAF1AQ13111 956 aaPredicted RBP23.9■■□□□ 1.42
CLN3-260ENST00000637578 NOGQ13253 232 aa23.9■■□□□ 1.42
CLN3-260ENST00000637578 FTSJ3Q8IY81 847 aaKnown RBP23.9■■□□□ 1.42
CLN3-260ENST00000637578 CCDC102AQ96A19 550 aa23.9■■□□□ 1.42
CLN3-260ENST00000637578 AIDAQ96BJ3 306 aa23.9■■□□□ 1.42
CLN3-260ENST00000637578 MRIQ9BWK5 157 aa23.9■■□□□ 1.42
CLN3-260ENST00000637578 SUGT1Q9Y2Z0 365 aa23.9■■□□□ 1.42
CLN3-260ENST00000637578 COL1A1P02452 1464 aaPredicted RBP23.89■■□□□ 1.41
CLN3-260ENST00000637578 PNMA6EA0A0J9YXQ4 647 aa23.89■■□□□ 1.41
CLN3-260ENST00000637578 ZBTB7BO15156 539 aaPredicted RBP23.89■■□□□ 1.41
CLN3-260ENST00000637578 MYO1BO43795 1136 aa23.89■■□□□ 1.41
CLN3-260ENST00000637578 HDLBPQ00341 1268 aaKnown RBP23.89■■□□□ 1.41
CLN3-260ENST00000637578 DEFB129Q9H1M3 183 aa23.89■■□□□ 1.41
CLN3-260ENST00000637578 PAPPA2Q9BXP8 1791 aa23.89■■□□□ 1.41
CLN3-260ENST00000637578 ARAP2Q8WZ64 1704 aa23.89■■□□□ 1.41
CLN3-260ENST00000637578 CTCFP49711 727 aaPredicted RBP23.88■■□□□ 1.41
CLN3-260ENST00000637578 PPP2R3BQ9Y5P8 575 aa23.88■■□□□ 1.41
CLN3-260ENST00000637578 RBM5P52756 815 aaKnown RBP eCLIP23.87■■□□□ 1.41
CLN3-260ENST00000637578 CRKP46108 304 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 ZNF157P51786 506 aaPredicted RBP23.86■■□□□ 1.41
CLN3-260ENST00000637578 POLA2Q14181 598 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 WDR66Q8TBY9 1149 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 ZIC5Q96T25 663 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 RCAN3Q9UKA8 241 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 CLRN2A0PK11 232 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 SLC10A3P09131 477 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 NF2P35240 595 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 ATP8B2P98198 1209 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 TFCP2Q12800 502 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 SPDYE2Q495Y8 402 aa23.86■■□□□ 1.41
CLN3-260ENST00000637578 MOB2Q70IA6 237 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms