RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SEMA3EO15041 775 aa22.62■■□□□ 1.21
CLN3-259ENST00000637551 G3BP1Q13283 466 aaKnown RBP eCLIP22.62■■□□□ 1.21
CLN3-259ENST00000637551 ATP2B3Q16720 1220 aa22.62■■□□□ 1.21
CLN3-259ENST00000637551 VPS37DQ86XT2 251 aa22.62■■□□□ 1.21
CLN3-259ENST00000637551 MICALL2Q8IY33 904 aa22.62■■□□□ 1.21
CLN3-259ENST00000637551 PA2G4Q9UQ80 394 aaKnown RBP22.62■■□□□ 1.21
CLN3-259ENST00000637551 PDS5AQ29RF7 1337 aaKnown RBP22.61■■□□□ 1.21
CLN3-259ENST00000637551 SNAP23O00161 211 aa22.61■■□□□ 1.21
CLN3-259ENST00000637551 USP17L8P0C7I0 530 aa22.61■■□□□ 1.21
CLN3-259ENST00000637551 ERC1Q8IUD2 1116 aa22.61■■□□□ 1.21
CLN3-259ENST00000637551 TBC1D22AQ8WUA7 517 aa22.61■■□□□ 1.21
CLN3-259ENST00000637551 KCNQ5Q9NR82 932 aa22.61■■□□□ 1.21
CLN3-259ENST00000637551 SUGT1Q9Y2Z0 365 aa22.61■■□□□ 1.21
CLN3-259ENST00000637551 OGFOD1Q8N543 542 aa22.6■■□□□ 1.21
CLN3-259ENST00000637551 PCDH10Q9P2E7 1040 aa22.6■■□□□ 1.21
CLN3-259ENST00000637551 POTEIP0CG38 1075 aa22.59■■□□□ 1.21
CLN3-259ENST00000637551 POTEJP0CG39 1038 aa22.59■■□□□ 1.21
CLN3-259ENST00000637551 AIDAQ96BJ3 306 aa22.59■■□□□ 1.21
CLN3-259ENST00000637551 GNL3LQ9NVN8 582 aaKnown RBP22.59■■□□□ 1.21
CLN3-259ENST00000637551 ZBTB12Q9Y330 459 aaPredicted RBP22.59■■□□□ 1.21
CLN3-259ENST00000637551 GYG1P46976 350 aa22.58■■□□□ 1.21
CLN3-259ENST00000637551 GTF2IP78347 998 aa22.58■■□□□ 1.21
CLN3-259ENST00000637551 HDAC9Q9UKV0 1011 aa22.58■■□□□ 1.21
CLN3-259ENST00000637551 PASKQ96RG2 1323 aa22.57■■□□□ 1.2
CLN3-259ENST00000637551 ECM29Q5VYK3 1845 aa22.57■■□□□ 1.2
CLN3-259ENST00000637551 EAPPQ56P03 285 aaPredicted RBP22.57■■□□□ 1.2
CLN3-259ENST00000637551 C20orf194Q5TEA3 1177 aa22.57■■□□□ 1.2
CLN3-259ENST00000637551 C1orf115Q9H7X2 142 aa22.57■■□□□ 1.2
CLN3-259ENST00000637551 WBP1LQ9NX94 342 aa22.57■■□□□ 1.2
CLN3-259ENST00000637551 PITPNM2Q9BZ72 1349 aa22.57■■□□□ 1.2
CLN3-259ENST00000637551 IGSF3O75054 1194 aa22.56■■□□□ 1.2
CLN3-259ENST00000637551 VEGFBP49765 207 aa22.56■■□□□ 1.2
CLN3-259ENST00000637551 MTMR14Q8NCE2 650 aa22.56■■□□□ 1.2
CLN3-259ENST00000637551 ABHD8Q96I13 439 aa22.56■■□□□ 1.2
CLN3-259ENST00000637551 A0A1B0GUL7 405 aa22.55■■□□□ 1.2
CLN3-259ENST00000637551 SURF6O75683 361 aaKnown RBP22.55■■□□□ 1.2
CLN3-259ENST00000637551 LBX1P52954 281 aa22.55■■□□□ 1.2
CLN3-259ENST00000637551 TFCP2Q12800 502 aa22.55■■□□□ 1.2
CLN3-259ENST00000637551 KIF4BQ2VIQ3 1234 aa22.55■■□□□ 1.2
CLN3-259ENST00000637551 WDR66Q8TBY9 1149 aa22.55■■□□□ 1.2
CLN3-259ENST00000637551 SALL1Q9NSC2 1324 aa22.55■■□□□ 1.2
CLN3-259ENST00000637551 TRPM7Q96QT4 1865 aa22.54■■□□□ 1.2
CLN3-259ENST00000637551 HDLBPQ00341 1268 aaKnown RBP22.54■■□□□ 1.2
CLN3-259ENST00000637551 MRIQ9BWK5 157 aa22.54■■□□□ 1.2
CLN3-259ENST00000637551 MYOZ2Q9NPC6 264 aa22.54■■□□□ 1.2
CLN3-259ENST00000637551 MAST3O60307 1309 aa22.54■■□□□ 1.2
CLN3-259ENST00000637551 ITGBL1O95965 494 aaPredicted RBP22.53■■□□□ 1.2
CLN3-259ENST00000637551 BCAMP50895 628 aa22.53■■□□□ 1.2
CLN3-259ENST00000637551 OS9Q13438 667 aaPredicted RBP22.53■■□□□ 1.2
CLN3-259ENST00000637551 MFSD14BQ5SR56 506 aa22.53■■□□□ 1.2
CLN3-259ENST00000637551 TRPM4Q8TD43 1214 aa22.53■■□□□ 1.2
CLN3-259ENST00000637551 DENND2AQ9ULE3 1009 aa22.53■■□□□ 1.2
CLN3-259ENST00000637551 RAB11FIP3O75154 756 aa22.52■■□□□ 1.2
CLN3-259ENST00000637551 FRAT2O75474 233 aaPredicted RBP22.52■■□□□ 1.2
CLN3-259ENST00000637551 CNTROBQ8N137 903 aa22.52■■□□□ 1.2
CLN3-259ENST00000637551 ZGPATQ8N5A5 531 aaKnown RBP22.52■■□□□ 1.2
CLN3-259ENST00000637551 ZNF512BQ96KM6 892 aaPredicted RBP22.52■■□□□ 1.2
CLN3-259ENST00000637551 CLEC11AQ9Y240 323 aa22.52■■□□□ 1.2
CLN3-259ENST00000637551 HIRAP54198 1017 aaPredicted RBP22.51■■□□□ 1.19
CLN3-259ENST00000637551 CCDC102BQ68D86 513 aa22.51■■□□□ 1.19
CLN3-259ENST00000637551 CERS5Q8N5B7 392 aa22.51■■□□□ 1.19
CLN3-259ENST00000637551 ZBED3Q96IU2 234 aaPredicted RBP22.51■■□□□ 1.19
CLN3-259ENST00000637551 SERPINA10Q9UK55 444 aa22.51■■□□□ 1.19
CLN3-259ENST00000637551 COL1A1P02452 1464 aaPredicted RBP22.51■■□□□ 1.19
CLN3-259ENST00000637551 TMEM88BA6NKF7 163 aa22.5■■□□□ 1.19
CLN3-259ENST00000637551 TNNI3KQ59H18 835 aa22.5■■□□□ 1.19
CLN3-259ENST00000637551 CDC37L1Q7L3B6 337 aa22.5■■□□□ 1.19
CLN3-259ENST00000637551 SAMD7Q7Z3H4 446 aa22.5■■□□□ 1.19
CLN3-259ENST00000637551 SIRT2Q8IXJ6 389 aa22.5■■□□□ 1.19
CLN3-259ENST00000637551 FBXW7Q969H0 707 aa22.5■■□□□ 1.19
CLN3-259ENST00000637551 KIF1BPQ96EK5 621 aa22.5■■□□□ 1.19
CLN3-259ENST00000637551 XAGE2Q96GT9 111 aa22.5■■□□□ 1.19
CLN3-259ENST00000637551 FPGT-TNNI3KV9GXZ4 949 aa22.5■■□□□ 1.19
CLN3-259ENST00000637551 HSPA8P11142 646 aaKnown RBP22.49■■□□□ 1.19
CLN3-259ENST00000637551 ARID4AP29374 1257 aaPredicted RBP22.49■■□□□ 1.19
CLN3-259ENST00000637551 TBC1D10BQ4KMP7 808 aaPredicted RBP22.49■■□□□ 1.19
CLN3-259ENST00000637551 KIAA0825Q8IV33 1275 aa22.49■■□□□ 1.19
CLN3-259ENST00000637551 POLR2AP24928 1970 aaKnown RBP22.49■■□□□ 1.19
CLN3-259ENST00000637551 UQCRFS1P1P0C7P4 283 aa22.48■■□□□ 1.19
CLN3-259ENST00000637551 DCPSQ96C86 337 aaKnown RBP22.48■■□□□ 1.19
CLN3-259ENST00000637551 SHTN1A0MZ66 631 aa22.47■■□□□ 1.19
CLN3-259ENST00000637551 PHKA1P46020 1223 aa22.47■■□□□ 1.19
CLN3-259ENST00000637551 RGS19P49795 217 aa22.47■■□□□ 1.19
CLN3-259ENST00000637551 TIMM10P62072 90 aa22.47■■□□□ 1.19
CLN3-259ENST00000637551 MAP1SQ66K74 1059 aaPredicted RBP22.47■■□□□ 1.19
CLN3-259ENST00000637551 WNT10BO00744 389 aa22.46■■□□□ 1.19
CLN3-259ENST00000637551 EGFRP00533 1210 aa22.46■■□□□ 1.19
CLN3-259ENST00000637551 MLLT1Q03111 559 aaPredicted RBP22.46■■□□□ 1.19
CLN3-259ENST00000637551 TMED8Q6PL24 325 aaPredicted RBP22.46■■□□□ 1.19
CLN3-259ENST00000637551 MYO1BO43795 1136 aa22.45■■□□□ 1.18
CLN3-259ENST00000637551 ADORA1P30542 326 aa22.45■■□□□ 1.18
CLN3-259ENST00000637551 DLGAP5Q15398 846 aa22.45■■□□□ 1.18
CLN3-259ENST00000637551 CCDC158Q5M9N0 1113 aa22.45■■□□□ 1.18
CLN3-259ENST00000637551 GORABQ5T7V8 394 aa22.45■■□□□ 1.18
CLN3-259ENST00000637551 APOBEC3FQ8IUX4 373 aaKnown RBP22.45■■□□□ 1.18
CLN3-259ENST00000637551 SULF1Q8IWU6 871 aa22.45■■□□□ 1.18
CLN3-259ENST00000637551 RHPN1Q8TCX5 695 aa22.45■■□□□ 1.18
CLN3-259ENST00000637551 NEUROD6Q96NK8 337 aa22.45■■□□□ 1.18
CLN3-259ENST00000637551 MXD3Q9BW11 206 aa22.45■■□□□ 1.18
CLN3-259ENST00000637551 AKAP11Q9UKA4 1901 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms