RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 NFE2L3Q9Y4A8 694 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 FPGT-TNNI3KV9GXZ4 949 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 ZFYVE16Q7Z3T8 1539 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 TET3O43151 1660 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 MNAT1P51948 309 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 POLA2Q14181 598 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 SART3Q15020 963 aaKnown RBP12.64□□□□□ -0.39
CLN3-244ENST00000636147 IQCB1Q15051 598 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 NSUN7Q8NE18 718 aaKnown RBP12.64□□□□□ -0.39
CLN3-244ENST00000636147 CAPZA3Q96KX2 299 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 LLPHQ9BRT6 129 aaKnown RBP12.64□□□□□ -0.39
CLN3-244ENST00000636147 PPP2R2CQ9Y2T4 447 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 CPSF1Q10570 1443 aaKnown RBP12.64□□□□□ -0.39
CLN3-244ENST00000636147 QRICH2Q9H0J4 1663 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 IVLP07476 585 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 TTC31Q49AM3 519 aaPredicted RBP12.64□□□□□ -0.39
CLN3-244ENST00000636147 CCDC148Q8NFR7 591 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 MPHOSPH8Q99549 860 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 GPHNQ9NQX3 736 aaPredicted RBP12.64□□□□□ -0.39
CLN3-244ENST00000636147 PRAMEF22A3QJZ6 481 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 PSDA5PKW4 1024 aaPredicted RBP12.64□□□□□ -0.39
CLN3-244ENST00000636147 IFIT3O14879 490 aaKnown RBP12.64□□□□□ -0.39
CLN3-244ENST00000636147 KIAA0754O94854 1291 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 SASH1O94885 1247 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 RBM6P78332 1123 aaKnown RBP12.64□□□□□ -0.39
CLN3-244ENST00000636147 MYSM1Q5VVJ2 828 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 PHKBQ93100 1093 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 DRC1Q96MC2 740 aa12.64□□□□□ -0.39
CLN3-244ENST00000636147 CTAGE9A4FU28 777 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 EFCAB8A8MWE9 144 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 CCZ1BP86790 482 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 CCZ1P86791 482 aaPredicted RBP12.63□□□□□ -0.39
CLN3-244ENST00000636147 FKBP15Q5T1M5 1219 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 HINFPQ9BQA5 517 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.63□□□□□ -0.392e-6■■■■■ 40.7
CLN3-244ENST00000636147 PDE11AQ9HCR9 933 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 PRR36Q9H6K5 1346 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 XBP1P17861 261 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 EIF5P55010 431 aaKnown RBP12.63□□□□□ -0.39
CLN3-244ENST00000636147 RAD51AP2Q09MP3 1159 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 E4F1Q66K89 784 aaPredicted RBP12.63□□□□□ -0.39
CLN3-244ENST00000636147 ZNHIT6Q9NWK9 470 aaKnown RBP12.63□□□□□ -0.39
CLN3-244ENST00000636147 GUCA1BQ9UMX6 200 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 AATKQ6ZMQ8 1374 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 E7EWF7 191 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 RDXP35241 583 aaKnown RBP12.63□□□□□ -0.39
CLN3-244ENST00000636147 PPARDQ03181 441 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 HDXQ7Z353 690 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 GPR161Q8N6U8 529 aaKnown RBP12.63□□□□□ -0.39
CLN3-244ENST00000636147 CLIC6Q96NY7 704 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 SLC12A7Q9Y666 1083 aa12.63□□□□□ -0.39
CLN3-244ENST00000636147 ARHGEF40Q8TER5 1519 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 PFKFB2O60825 505 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 CABP4P57796 275 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 TMEM67Q5HYA8 995 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 SARM1Q6SZW1 724 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 DHX58Q96C10 678 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 PLEKHA4Q9H4M7 779 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 CCT6AP40227 531 aaKnown RBP12.62□□□□□ -0.39
CLN3-244ENST00000636147 ST5P78524 1137 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 CCDC181Q5TID7 509 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 ATL3Q6DD88 541 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 MYL10Q9BUA6 226 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 FAM107BQ9H098 131 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 AIDAQ96BJ3 306 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 PARD6BQ9BYG5 372 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 TMEM51Q9NW97 253 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 MAGEC2Q9UBF1 373 aaPredicted RBP12.62□□□□□ -0.39
CLN3-244ENST00000636147 DBNLQ9UJU6 430 aaKnown RBP12.62□□□□□ -0.39
CLN3-244ENST00000636147 KCNH3Q9ULD8 1083 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 MYOM1P52179 1685 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 ERCC6L2Q5T890 1561 aa12.62□□□□□ -0.39
CLN3-244ENST00000636147 ABCC3O15438 1527 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 TATP17735 454 aaPredicted RBP12.61□□□□□ -0.39
CLN3-244ENST00000636147 TDO2P48775 406 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 ARMCX5Q6P1M9 558 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 BRAPQ7Z569 592 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 CEP112Q8N8E3 955 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 TTC21AQ8NDW8 1320 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 POTEB2H3BUK9 544 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 SSRP1Q08945 709 aaKnown RBP12.61□□□□□ -0.39
CLN3-244ENST00000636147 LONRF2Q1L5Z9 754 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 AMOTQ4VCS5 1084 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 IGSF22Q8N9C0 903 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 KBTBD3Q8NAB2 608 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 LRRN4CLQ8ND94 238 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 JADE2Q9NQC1 790 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 AKR1B15C9JRZ8 316 aaPredicted RBP12.61□□□□□ -0.39
CLN3-244ENST00000636147 POLR2DO15514 142 aaKnown RBP12.61□□□□□ -0.39
CLN3-244ENST00000636147 ZBTB43O43298 467 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 PDIA3P30101 505 aaKnown RBP12.61□□□□□ -0.39
CLN3-244ENST00000636147 METTL24Q5JXM2 366 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 NBPF6Q5VWK0 638 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 DHX40Q8IX18 779 aaKnown RBP12.61□□□□□ -0.39
CLN3-244ENST00000636147 ZNF594Q96JF6 807 aaPredicted RBP12.61□□□□□ -0.39
CLN3-244ENST00000636147 NBPF4Q96M43 638 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 BRMS1Q9HCU9 246 aa12.61□□□□□ -0.39
CLN3-244ENST00000636147 GLI2P10070 1586 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 SHTN1A0MZ66 631 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 ADD1P35611 737 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms