RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 C20orf194Q5TEA3 1177 aa22.56■■□□□ 1.2
CLN3-243ENST00000635973 ASTN2O75129 1339 aaPredicted RBP22.56■■□□□ 1.2
CLN3-243ENST00000635973 ZBTB7BO15156 539 aaPredicted RBP22.55■■□□□ 1.2
CLN3-243ENST00000635973 NOGQ13253 232 aa22.55■■□□□ 1.2
CLN3-243ENST00000635973 DACT2Q5SW24 774 aa22.55■■□□□ 1.2
CLN3-243ENST00000635973 TTLL5Q6EMB2 1281 aa22.55■■□□□ 1.2
CLN3-243ENST00000635973 RGMBQ6NW40 437 aa22.55■■□□□ 1.2
CLN3-243ENST00000635973 TXNRD3Q86VQ6 643 aa22.55■■□□□ 1.2
CLN3-243ENST00000635973 CHMP4BQ9H444 224 aaKnown RBP22.55■■□□□ 1.2
CLN3-243ENST00000635973 C1orf115Q9H7X2 142 aa22.55■■□□□ 1.2
CLN3-243ENST00000635973 CA12O43570 354 aa22.54■■□□□ 1.2
CLN3-243ENST00000635973 CDCA5Q96FF9 252 aa22.54■■□□□ 1.2
CLN3-243ENST00000635973 MXD3Q9BW11 206 aa22.54■■□□□ 1.2
CLN3-243ENST00000635973 HDAC9Q9UKV0 1011 aa22.54■■□□□ 1.2
CLN3-243ENST00000635973 SRGAP3O43295 1099 aa22.53■■□□□ 1.2
CLN3-243ENST00000635973 TAF5LO75529 589 aa22.53■■□□□ 1.2
CLN3-243ENST00000635973 ZNF157P51786 506 aaPredicted RBP22.53■■□□□ 1.2
CLN3-243ENST00000635973 HELBQ8NG08 1087 aaPredicted RBP22.53■■□□□ 1.2
CLN3-243ENST00000635973 CCDC102AQ96A19 550 aa22.53■■□□□ 1.2
CLN3-243ENST00000635973 PITPNM2Q9BZ72 1349 aa22.53■■□□□ 1.2
CLN3-243ENST00000635973 KLRK1P26718 216 aa22.52■■□□□ 1.2
CLN3-243ENST00000635973 MMP14P50281 582 aa22.52■■□□□ 1.2
CLN3-243ENST00000635973 GTF2IP78347 998 aa22.52■■□□□ 1.2
CLN3-243ENST00000635973 KLHDC4Q8TBB5 520 aa22.52■■□□□ 1.2
CLN3-243ENST00000635973 A0A1B0GUL6 1792 aa22.51■■□□□ 1.19
CLN3-243ENST00000635973 TSKSQ9UJT2 592 aa22.51■■□□□ 1.19
CLN3-243ENST00000635973 ZNF646O15015 1829 aaPredicted RBP22.5■■□□□ 1.19
CLN3-243ENST00000635973 NBPF9Q3BBW0 867 aa22.5■■□□□ 1.19
CLN3-243ENST00000635973 ZNF804AQ7Z570 1209 aa22.5■■□□□ 1.19
CLN3-243ENST00000635973 KIAA0825Q8IV33 1275 aa22.5■■□□□ 1.19
CLN3-243ENST00000635973 ABHD8Q96I13 439 aa22.5■■□□□ 1.19
CLN3-243ENST00000635973 PUS3Q9BZE2 481 aaKnown RBP22.5■■□□□ 1.19
CLN3-243ENST00000635973 CD209Q9NNX6 404 aa22.5■■□□□ 1.19
CLN3-243ENST00000635973 RFX5P48382 616 aaPredicted RBP22.49■■□□□ 1.19
CLN3-243ENST00000635973 MTX1Q13505 466 aa22.49■■□□□ 1.19
CLN3-243ENST00000635973 METTL24Q5JXM2 366 aa22.49■■□□□ 1.19
CLN3-243ENST00000635973 SIL1Q9H173 461 aa22.49■■□□□ 1.19
CLN3-243ENST00000635973 MROH5Q6ZUA9 1318 aa22.49■■□□□ 1.19
CLN3-243ENST00000635973 PTPN12Q05209 780 aaKnown RBP22.48■■□□□ 1.19
CLN3-243ENST00000635973 LRRC24Q50LG9 513 aa22.48■■□□□ 1.19
CLN3-243ENST00000635973 AKAP11Q9UKA4 1901 aa22.47■■□□□ 1.19
CLN3-243ENST00000635973 SNAP23O00161 211 aa22.47■■□□□ 1.19
CLN3-243ENST00000635973 EYA2O00167 538 aa22.47■■□□□ 1.19
CLN3-243ENST00000635973 WNT10BO00744 389 aa22.47■■□□□ 1.19
CLN3-243ENST00000635973 NF2P35240 595 aa22.47■■□□□ 1.19
CLN3-243ENST00000635973 FKBP1BP68106 108 aa22.47■■□□□ 1.19
CLN3-243ENST00000635973 TTLL12Q14166 644 aaPredicted RBP22.47■■□□□ 1.19
CLN3-243ENST00000635973 SCAF8Q9UPN6 1271 aaKnown RBP22.47■■□□□ 1.19
CLN3-243ENST00000635973 PA2G4Q9UQ80 394 aaKnown RBP22.47■■□□□ 1.19
CLN3-243ENST00000635973 SASH1O94885 1247 aa22.46■■□□□ 1.19
CLN3-243ENST00000635973 C15orf52Q6ZUT6 534 aaKnown RBP22.46■■□□□ 1.19
CLN3-243ENST00000635973 ZBTB40Q9NUA8 1239 aa22.46■■□□□ 1.19
CLN3-243ENST00000635973 RIPOR2Q9Y4F9 1068 aa22.46■■□□□ 1.19
CLN3-243ENST00000635973 PAPPA2Q9BXP8 1791 aa22.45■■□□□ 1.19
CLN3-243ENST00000635973 PNMA6EA0A0J9YXQ4 647 aa22.45■■□□□ 1.18
CLN3-243ENST00000635973 FAM155AB1AL88 458 aaPredicted RBP22.45■■□□□ 1.18
CLN3-243ENST00000635973 KIF23Q02241 960 aaPredicted RBP22.45■■□□□ 1.18
CLN3-243ENST00000635973 ZIC5Q96T25 663 aa22.45■■□□□ 1.18
CLN3-243ENST00000635973 COPRSQ9NQ92 184 aa22.45■■□□□ 1.18
CLN3-243ENST00000635973 FBXO3Q9UK99 471 aa22.45■■□□□ 1.18
CLN3-243ENST00000635973 SUPT16HQ9Y5B9 1047 aaKnown RBP22.45■■□□□ 1.18
CLN3-243ENST00000635973 CIAO1O76071 339 aa22.44■■□□□ 1.18
CLN3-243ENST00000635973 ATP8B2P98198 1209 aa22.44■■□□□ 1.18
CLN3-243ENST00000635973 DLGAP5Q15398 846 aa22.44■■□□□ 1.18
CLN3-243ENST00000635973 CEP85Q6P2H3 762 aa22.44■■□□□ 1.18
CLN3-243ENST00000635973 APOBEC3FQ8IUX4 373 aaKnown RBP22.44■■□□□ 1.18
CLN3-243ENST00000635973 CASP8AP2Q9UKL3 1982 aa22.44■■□□□ 1.18
CLN3-243ENST00000635973 SLC10A3P09131 477 aa22.43■■□□□ 1.18
CLN3-243ENST00000635973 IL1R1P14778 569 aa22.43■■□□□ 1.18
CLN3-243ENST00000635973 PRAMEF18Q5VWM3 479 aa22.43■■□□□ 1.18
CLN3-243ENST00000635973 F8W031 263 aaPredicted RBP22.42■■□□□ 1.18
CLN3-243ENST00000635973 IL15P40933 162 aaPredicted RBP22.42■■□□□ 1.18
CLN3-243ENST00000635973 CRBNQ96SW2 442 aa22.42■■□□□ 1.18
CLN3-243ENST00000635973 IRS2Q9Y4H2 1338 aa22.41■■□□□ 1.18
CLN3-243ENST00000635973 MYO1BO43795 1136 aa22.41■■□□□ 1.18
CLN3-243ENST00000635973 OS9Q13438 667 aaPredicted RBP22.41■■□□□ 1.18
CLN3-243ENST00000635973 UBE4AQ14139 1066 aa22.41■■□□□ 1.18
CLN3-243ENST00000635973 POLA2Q14181 598 aa22.41■■□□□ 1.18
CLN3-243ENST00000635973 ATG9AQ7Z3C6 839 aa22.41■■□□□ 1.18
CLN3-243ENST00000635973 REM2Q8IYK8 340 aaPredicted RBP22.41■■□□□ 1.18
CLN3-243ENST00000635973 SSH3Q8TE77 659 aa22.41■■□□□ 1.18
CLN3-243ENST00000635973 CEP126Q9P2H0 1117 aa22.41■■□□□ 1.18
CLN3-243ENST00000635973 ECM29Q5VYK3 1845 aa22.41■■□□□ 1.18
CLN3-243ENST00000635973 UBE2Q2LH0YL09 131 aa22.4■■□□□ 1.18
CLN3-243ENST00000635973 HMMRO75330 724 aa22.4■■□□□ 1.18
CLN3-243ENST00000635973 PDE8BO95263 885 aa22.4■■□□□ 1.18
CLN3-243ENST00000635973 G3BP1Q13283 466 aaKnown RBP eCLIP22.4■■□□□ 1.18
CLN3-243ENST00000635973 PUM3Q15397 648 aaKnown RBP22.4■■□□□ 1.18
CLN3-243ENST00000635973 JAG2Q9Y219 1238 aa22.4■■□□□ 1.18
CLN3-243ENST00000635973 HIBADHP31937 336 aaKnown RBP22.39■■□□□ 1.17
CLN3-243ENST00000635973 RBM5P52756 815 aaKnown RBP eCLIP22.39■■□□□ 1.17
CLN3-243ENST00000635973 FKBP1AP62942 108 aaKnown RBP22.39■■□□□ 1.17
CLN3-243ENST00000635973 MOB2Q70IA6 237 aa22.39■■□□□ 1.17
CLN3-243ENST00000635973 ARMC9Q7Z3E5 817 aa22.39■■□□□ 1.17
CLN3-243ENST00000635973 VPS37DQ86XT2 251 aa22.39■■□□□ 1.17
CLN3-243ENST00000635973 RASAL3Q86YV0 1011 aa22.39■■□□□ 1.17
CLN3-243ENST00000635973 RPAP2Q8IXW5 612 aaPredicted RBP22.39■■□□□ 1.17
CLN3-243ENST00000635973 CERS5Q8N5B7 392 aa22.39■■□□□ 1.17
CLN3-243ENST00000635973 SAGE1Q9NXZ1 904 aa22.39■■□□□ 1.17
CLN3-243ENST00000635973 SURF6O75683 361 aaKnown RBP22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms