RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 OAS3Q9Y6K5 1087 aaKnown RBP6.9□□□□□ -1.3
SCN1A-211ENST00000635893 PAX4O43316 350 aa6.89□□□□□ -1.31
SCN1A-211ENST00000635893 SPINK2P20155 84 aa6.89□□□□□ -1.31
SCN1A-211ENST00000635893 SHKBP1Q8TBC3 707 aa6.89□□□□□ -1.31
SCN1A-211ENST00000635893 POLIQ9UNA4 740 aa6.89□□□□□ -1.31
SCN1A-211ENST00000635893 SOX1O00570 391 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-211ENST00000635893 EREGO14944 169 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 GAS2O43903 313 aaKnown RBP6.88□□□□□ -1.31
SCN1A-211ENST00000635893 PHACTR2O75167 634 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 EDN3P14138 238 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 NPR3P17342 541 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 SSFA2P28290 1259 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 USP5P45974 858 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 EHHADHQ08426 723 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 IKBKEQ14164 716 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 HGSNATQ68CP4 663 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 VN1R5Q7Z5H4 357 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 DTX1Q86Y01 620 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 ZKSCAN3Q9BRR0 538 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 GOLGA2P5Q9HBQ8 144 aa6.88□□□□□ -1.31
SCN1A-211ENST00000635893 TNFRSF21O75509 655 aa6.87□□□□□ -1.31
SCN1A-211ENST00000635893 AAMPQ13685 434 aa6.87□□□□□ -1.31
SCN1A-211ENST00000635893 NUTM2GQ5VZR2 741 aa6.87□□□□□ -1.31
SCN1A-211ENST00000635893 SNX29Q8TEQ0 813 aa6.87□□□□□ -1.31
SCN1A-211ENST00000635893 SOX17Q9H6I2 414 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-211ENST00000635893 TMEM88BA6NKF7 163 aa6.86□□□□□ -1.31
SCN1A-211ENST00000635893 WDR64B1ANS9 1081 aa6.86□□□□□ -1.31
SCN1A-211ENST00000635893 ADAMTS4O75173 837 aa6.86□□□□□ -1.31
SCN1A-211ENST00000635893 FAM13AO94988 1023 aa6.86□□□□□ -1.31
SCN1A-211ENST00000635893 MAP4P27816 1152 aaKnown RBP6.86□□□□□ -1.31
SCN1A-211ENST00000635893 MTMR3Q13615 1198 aa6.86□□□□□ -1.31
SCN1A-211ENST00000635893 SMG8Q8ND04 991 aaKnown RBP6.86□□□□□ -1.31
SCN1A-211ENST00000635893 TMPRSS13Q9BYE2 586 aa6.86□□□□□ -1.31
SCN1A-211ENST00000635893 BHLHE41Q9C0J9 482 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-211ENST00000635893 SUGCTQ9HAC7 445 aa6.86□□□□□ -1.31
SCN1A-211ENST00000635893 CYP4F12Q9HCS2 524 aa6.86□□□□□ -1.31
SCN1A-211ENST00000635893 ARID3CA6NKF2 412 aa6.85□□□□□ -1.31
SCN1A-211ENST00000635893 EIF4EBP3O60516 100 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-211ENST00000635893 WNT11O96014 354 aa6.85□□□□□ -1.31
SCN1A-211ENST00000635893 TAL1P17542 331 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-211ENST00000635893 TXKP42681 527 aa6.85□□□□□ -1.31
SCN1A-211ENST00000635893 KRTAP19-1Q8IUB9 90 aa6.85□□□□□ -1.31
SCN1A-211ENST00000635893 C12orf50Q8NA57 414 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-211ENST00000635893 GIMAP7Q8NHV1 300 aa6.85□□□□□ -1.31
SCN1A-211ENST00000635893 ASAP3Q8TDY4 903 aa6.85□□□□□ -1.31
SCN1A-211ENST00000635893 FMNL2Q96PY5 1086 aa6.85□□□□□ -1.31
SCN1A-211ENST00000635893 USP26Q9BXU7 913 aa6.85□□□□□ -1.31
SCN1A-211ENST00000635893 MTMR7Q9Y216 660 aa6.85□□□□□ -1.31
SCN1A-211ENST00000635893 LOC100289279A0A1B0GTE1 492 aa6.84□□□□□ -1.31
SCN1A-211ENST00000635893 PPP1R15AO75807 674 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-211ENST00000635893 TIAF1O95411 115 aa6.84□□□□□ -1.31
SCN1A-211ENST00000635893 SF3B2Q13435 895 aaKnown RBP6.84□□□□□ -1.31
SCN1A-211ENST00000635893 SGO2Q562F6 1265 aa6.84□□□□□ -1.31
SCN1A-211ENST00000635893 MFSD14AQ96MC6 490 aa6.84□□□□□ -1.31
SCN1A-211ENST00000635893 PIM2Q9P1W9 311 aa6.84□□□□□ -1.31
SCN1A-211ENST00000635893 FOXD3Q9UJU5 478 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-211ENST00000635893 AMOTL2Q9Y2J4 779 aa6.84□□□□□ -1.31
SCN1A-211ENST00000635893 ESRRAP11474 423 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-211ENST00000635893 RXRBP28702 533 aa6.83□□□□□ -1.32
SCN1A-211ENST00000635893 FKBP4Q02790 459 aaKnown RBP eCLIP6.83□□□□□ -1.32
SCN1A-211ENST00000635893 ATG3Q9NT62 314 aa6.83□□□□□ -1.32
SCN1A-211ENST00000635893 FZD6O60353 706 aa6.82□□□□□ -1.32
SCN1A-211ENST00000635893 CPSF6Q16630 551 aaKnown RBP eCLIP6.82□□□□□ -1.32
SCN1A-211ENST00000635893 EXOSC6Q5RKV6 272 aaKnown RBP6.82□□□□□ -1.32
SCN1A-211ENST00000635893 PEAR1Q5VY43 1037 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-211ENST00000635893 LEMD3Q9Y2U8 911 aa6.82□□□□□ -1.32
SCN1A-211ENST00000635893 FAM95CA0A1B0GW59 222 aa6.81□□□□□ -1.32
SCN1A-211ENST00000635893 DLGAP3O95886 979 aa6.81□□□□□ -1.32
SCN1A-211ENST00000635893 F13BP05160 661 aa6.81□□□□□ -1.32
SCN1A-211ENST00000635893 GSTM4Q03013 218 aa6.81□□□□□ -1.32
SCN1A-211ENST00000635893 GJD3Q8N144 294 aa6.81□□□□□ -1.32
SCN1A-211ENST00000635893 CCDC82Q8N4S0 544 aa6.81□□□□□ -1.32
SCN1A-211ENST00000635893 ZFYVE28Q9HCC9 887 aa6.81□□□□□ -1.32
SCN1A-211ENST00000635893 LATS2Q9NRM7 1088 aa6.81□□□□□ -1.32
SCN1A-211ENST00000635893 HOXA10P31260 410 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-211ENST00000635893 USP11P51784 963 aa6.8□□□□□ -1.32
SCN1A-211ENST00000635893 PAOXQ6QHF9 649 aa6.8□□□□□ -1.32
SCN1A-211ENST00000635893 FBXL6Q8N531 539 aa6.8□□□□□ -1.32
SCN1A-211ENST00000635893 OSBPL1AQ9BXW6 950 aa6.8□□□□□ -1.32
SCN1A-211ENST00000635893 BTBD11A6QL63 1104 aa6.79□□□□□ -1.32
SCN1A-211ENST00000635893 DRD2P14416 443 aa6.79□□□□□ -1.32
SCN1A-211ENST00000635893 FOSL1P15407 271 aa6.79□□□□□ -1.32
SCN1A-211ENST00000635893 SOX4Q06945 474 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-211ENST00000635893 NFKBIBQ15653 356 aa6.79□□□□□ -1.32
SCN1A-211ENST00000635893 PHLDB3Q6NSJ2 640 aa6.79□□□□□ -1.32
SCN1A-211ENST00000635893 C2CD4AQ8NCU7 369 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-211ENST00000635893 FBLIM1Q8WUP2 373 aa6.79□□□□□ -1.32
SCN1A-211ENST00000635893 METTL22Q9BUU2 404 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-211ENST00000635893 YIPF2Q9BWQ6 316 aa6.79□□□□□ -1.32
SCN1A-211ENST00000635893 CCDC87Q9NVE4 849 aa6.79□□□□□ -1.32
SCN1A-211ENST00000635893 METTL12A8MUP2 240 aa6.78□□□□□ -1.32
SCN1A-211ENST00000635893 ABL1P00519 1130 aa6.78□□□□□ -1.32
SCN1A-211ENST00000635893 CDPF1Q6NVV7 123 aa6.78□□□□□ -1.32
SCN1A-211ENST00000635893 CCNJLQ8IV13 435 aa6.78□□□□□ -1.32
SCN1A-211ENST00000635893 NRSN2Q9GZP1 204 aa6.78□□□□□ -1.32
SCN1A-211ENST00000635893 CLEC4MQ9H2X3 399 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-211ENST00000635893 ADGRE2Q9UHX3 823 aa6.78□□□□□ -1.32
SCN1A-211ENST00000635893 RNF114Q9Y508 228 aa6.78□□□□□ -1.32
SCN1A-211ENST00000635893 A0A096LPE4 126 aa6.77□□□□□ -1.33
SCN1A-211ENST00000635893 A0A1W2PPZ6 126 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms