RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 MAP2K2P36507 400 aa19.56■□□□□ 0.72
LINC00339-209ENST00000635450 CNNM1Q9NRU3 951 aa19.56■□□□□ 0.72
LINC00339-209ENST00000635450 RABL6Q3YEC7 729 aaPredicted RBP19.55■□□□□ 0.72
LINC00339-209ENST00000635450 RGMBQ6NW40 437 aa19.55■□□□□ 0.72
LINC00339-209ENST00000635450 C2orf69Q8N8R5 385 aa19.55■□□□□ 0.72
LINC00339-209ENST00000635450 ARHGAP45Q92619 1136 aa19.55■□□□□ 0.72
LINC00339-209ENST00000635450 ZBED3Q96IU2 234 aaPredicted RBP19.55■□□□□ 0.72
LINC00339-209ENST00000635450 MYH13Q9UKX3 1938 aa19.55■□□□□ 0.72
LINC00339-209ENST00000635450 KLHDC4Q8TBB5 520 aa19.54■□□□□ 0.72
LINC00339-209ENST00000635450 BCAR3O75815 825 aa19.53■□□□□ 0.72
LINC00339-209ENST00000635450 IL1R1P14778 569 aa19.53■□□□□ 0.72
LINC00339-209ENST00000635450 LRRC24Q50LG9 513 aa19.53■□□□□ 0.72
LINC00339-209ENST00000635450 ZNF804AQ7Z570 1209 aa19.53■□□□□ 0.72
LINC00339-209ENST00000635450 OGFOD1Q8N543 542 aa19.53■□□□□ 0.72
LINC00339-209ENST00000635450 FRAT1Q92837 279 aaPredicted RBP19.53■□□□□ 0.72
LINC00339-209ENST00000635450 USP44Q9H0E7 712 aa19.53■□□□□ 0.72
LINC00339-209ENST00000635450 F8W031 263 aaPredicted RBP19.52■□□□□ 0.72
LINC00339-209ENST00000635450 GYG1P46976 350 aa19.52■□□□□ 0.72
LINC00339-209ENST00000635450 NOGQ13253 232 aa19.52■□□□□ 0.72
LINC00339-209ENST00000635450 RIPOR2Q9Y4F9 1068 aa19.52■□□□□ 0.72
LINC00339-209ENST00000635450 SSC5DA1L4H1 1573 aa19.52■□□□□ 0.71
LINC00339-209ENST00000635450 OTOFQ9HC10 1997 aa19.52■□□□□ 0.71
LINC00339-209ENST00000635450 SLC10A3P09131 477 aa19.51■□□□□ 0.71
LINC00339-209ENST00000635450 ZNF157P51786 506 aaPredicted RBP19.51■□□□□ 0.71
LINC00339-209ENST00000635450 RASAL3Q86YV0 1011 aa19.51■□□□□ 0.71
LINC00339-209ENST00000635450 BEGAINQ9BUH8 593 aa19.51■□□□□ 0.71
LINC00339-209ENST00000635450 KIF23Q02241 960 aaPredicted RBP19.5■□□□□ 0.71
LINC00339-209ENST00000635450 ATF7IPQ6VMQ6 1270 aa19.5■□□□□ 0.71
LINC00339-209ENST00000635450 FZD1Q9UP38 647 aa19.5■□□□□ 0.71
LINC00339-209ENST00000635450 ZKSCAN2Q63HK3 967 aa19.49■□□□□ 0.71
LINC00339-209ENST00000635450 VGLL2Q8N8G2 317 aa19.49■□□□□ 0.71
LINC00339-209ENST00000635450 FAM84BQ96KN1 310 aaPredicted RBP19.49■□□□□ 0.71
LINC00339-209ENST00000635450 HDAC5Q9UQL6 1122 aa19.49■□□□□ 0.71
LINC00339-209ENST00000635450 UBE2Q2LH0YL09 131 aa19.48■□□□□ 0.71
LINC00339-209ENST00000635450 UBTFL1P0CB47 393 aaPredicted RBP19.48■□□□□ 0.71
LINC00339-209ENST00000635450 TRIM27P14373 513 aa19.48■□□□□ 0.71
LINC00339-209ENST00000635450 UBE4AQ14139 1066 aa19.48■□□□□ 0.71
LINC00339-209ENST00000635450 GRIK5Q16478 980 aa19.48■□□□□ 0.71
LINC00339-209ENST00000635450 HDAC9Q9UKV0 1011 aa19.48■□□□□ 0.71
LINC00339-209ENST00000635450 IQSEC3Q9UPP2 1182 aaPredicted RBP19.48■□□□□ 0.71
LINC00339-209ENST00000635450 CLRN2A0PK11 232 aa19.47■□□□□ 0.71
LINC00339-209ENST00000635450 RFX5P48382 616 aaPredicted RBP19.47■□□□□ 0.71
LINC00339-209ENST00000635450 INTS3Q68E01 1043 aaKnown RBP19.47■□□□□ 0.71
LINC00339-209ENST00000635450 TDRD7Q8NHU6 1098 aaKnown RBP19.47■□□□□ 0.71
LINC00339-209ENST00000635450 LAMB1P07942 1786 aa19.47■□□□□ 0.71
LINC00339-209ENST00000635450 PRKG1Q13976 671 aa19.46■□□□□ 0.71
LINC00339-209ENST00000635450 CFAP100Q494V2 611 aa19.46■□□□□ 0.71
LINC00339-209ENST00000635450 METTL24Q5JXM2 366 aa19.46■□□□□ 0.71
LINC00339-209ENST00000635450 CCDC102AQ96A19 550 aa19.46■□□□□ 0.71
LINC00339-209ENST00000635450 COL1A1P02452 1464 aaPredicted RBP19.46■□□□□ 0.71
LINC00339-209ENST00000635450 FAM205AQ6ZU69 1335 aa19.46■□□□□ 0.71
LINC00339-209ENST00000635450 MROH5Q6ZUA9 1318 aa19.46■□□□□ 0.71
LINC00339-209ENST00000635450 SPDYE2BA6NHP3 402 aa19.45■□□□□ 0.7
LINC00339-209ENST00000635450 SPDYE6P0CI01 402 aa19.45■□□□□ 0.7
LINC00339-209ENST00000635450 HIBADHP31937 336 aaKnown RBP19.45■□□□□ 0.7
LINC00339-209ENST00000635450 FKBP1BP68106 108 aa19.45■□□□□ 0.7
LINC00339-209ENST00000635450 DLGAP5Q15398 846 aa19.45■□□□□ 0.7
LINC00339-209ENST00000635450 MFSD14BQ5SR56 506 aa19.45■□□□□ 0.7
LINC00339-209ENST00000635450 APOBEC3FQ8IUX4 373 aaKnown RBP19.45■□□□□ 0.7
LINC00339-209ENST00000635450 MTMR14Q8NCE2 650 aa19.45■□□□□ 0.7
LINC00339-209ENST00000635450 CLUAP1Q96AJ1 413 aa19.45■□□□□ 0.7
LINC00339-209ENST00000635450 PRMT6Q96LA8 375 aaPredicted RBP19.45■□□□□ 0.7
LINC00339-209ENST00000635450 CA12O43570 354 aa19.44■□□□□ 0.7
LINC00339-209ENST00000635450 FKBP1AP62942 108 aaKnown RBP19.44■□□□□ 0.7
LINC00339-209ENST00000635450 TTLL12Q14166 644 aaPredicted RBP19.44■□□□□ 0.7
LINC00339-209ENST00000635450 ABHD8Q96I13 439 aa19.44■□□□□ 0.7
LINC00339-209ENST00000635450 CSRNP1Q96S65 589 aa19.44■□□□□ 0.7
LINC00339-209ENST00000635450 TNNQ9UQP3 1299 aa19.44■□□□□ 0.7
LINC00339-209ENST00000635450 GNAI3P08754 354 aa19.43■□□□□ 0.7
LINC00339-209ENST00000635450 MKRN3Q13064 507 aaKnown RBP19.43■□□□□ 0.7
LINC00339-209ENST00000635450 FBXO33Q7Z6M2 555 aa19.43■□□□□ 0.7
LINC00339-209ENST00000635450 FTSJ3Q8IY81 847 aaKnown RBP19.43■□□□□ 0.7
LINC00339-209ENST00000635450 PDE8BO95263 885 aa19.42■□□□□ 0.7
LINC00339-209ENST00000635450 MMP14P50281 582 aa19.42■□□□□ 0.7
LINC00339-209ENST00000635450 PTPN12Q05209 780 aaKnown RBP19.42■□□□□ 0.7
LINC00339-209ENST00000635450 CHAF1AQ13111 956 aaPredicted RBP19.42■□□□□ 0.7
LINC00339-209ENST00000635450 CDAN1Q8IWY9 1227 aa19.42■□□□□ 0.7
LINC00339-209ENST00000635450 MEIS3Q99687 375 aa19.42■□□□□ 0.7
LINC00339-209ENST00000635450 DEFB129Q9H1M3 183 aa19.42■□□□□ 0.7
LINC00339-209ENST00000635450 VEZTQ9HBM0 779 aa19.42■□□□□ 0.7
LINC00339-209ENST00000635450 RNF186Q9NXI6 227 aa19.42■□□□□ 0.7
LINC00339-209ENST00000635450 TRPA1O75762 1119 aa19.41■□□□□ 0.7
LINC00339-209ENST00000635450 FGFR2P21802 821 aa19.41■□□□□ 0.7
LINC00339-209ENST00000635450 BCAMP50895 628 aa19.41■□□□□ 0.7
LINC00339-209ENST00000635450 ATG9AQ7Z3C6 839 aa19.41■□□□□ 0.7
LINC00339-209ENST00000635450 TTF2Q9UNY4 1162 aaKnown RBP19.41■□□□□ 0.7
LINC00339-209ENST00000635450 LRRFIP2Q9Y608 721 aaKnown RBP19.41■□□□□ 0.7
LINC00339-209ENST00000635450 EYA2O00167 538 aa19.4■□□□□ 0.7
LINC00339-209ENST00000635450 RBM5P52756 815 aaKnown RBP eCLIP19.4■□□□□ 0.7
LINC00339-209ENST00000635450 DZIP1LQ8IYY4 767 aaKnown RBP19.4■□□□□ 0.7
LINC00339-209ENST00000635450 SIL1Q9H173 461 aa19.4■□□□□ 0.7
LINC00339-209ENST00000635450 NF2P35240 595 aa19.39■□□□□ 0.69
LINC00339-209ENST00000635450 TMEM57Q8N5G2 664 aa19.39■□□□□ 0.69
LINC00339-209ENST00000635450 CLMNQ96JQ2 1002 aa19.39■□□□□ 0.69
LINC00339-209ENST00000635450 MCOLN1Q9GZU1 580 aa19.39■□□□□ 0.69
LINC00339-209ENST00000635450 SAGE1Q9NXZ1 904 aa19.39■□□□□ 0.69
LINC00339-209ENST00000635450 ANGEL1Q9UNK9 670 aaKnown RBP19.39■□□□□ 0.69
LINC00339-209ENST00000635450 PA2G4Q9UQ80 394 aaKnown RBP19.39■□□□□ 0.69
LINC00339-209ENST00000635450 MS4A1P11836 297 aa19.38■□□□□ 0.69
LINC00339-209ENST00000635450 PUM3Q15397 648 aaKnown RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms