RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 HIRAP54198 1017 aaPredicted RBP22.36■■□□□ 1.17
CLN3-239ENST00000628023 C15orf52Q6ZUT6 534 aaKnown RBP22.36■■□□□ 1.17
CLN3-239ENST00000628023 VPS37DQ86XT2 251 aa22.36■■□□□ 1.17
CLN3-239ENST00000628023 TRPM4Q8TD43 1214 aa22.36■■□□□ 1.17
CLN3-239ENST00000628023 FBXW7Q969H0 707 aa22.36■■□□□ 1.17
CLN3-239ENST00000628023 LBX1P52954 281 aa22.35■■□□□ 1.17
CLN3-239ENST00000628023 ATP2B3Q16720 1220 aa22.35■■□□□ 1.17
CLN3-239ENST00000628023 CYP4F22Q6NT55 531 aa22.35■■□□□ 1.17
CLN3-239ENST00000628023 PODNQ7Z5L7 613 aa22.35■■□□□ 1.17
CLN3-239ENST00000628023 ZNF408Q9H9D4 720 aa22.35■■□□□ 1.17
CLN3-239ENST00000628023 TFCP2Q12800 502 aa22.34■■□□□ 1.17
CLN3-239ENST00000628023 CAVIN4Q5BKX8 364 aa22.34■■□□□ 1.17
CLN3-239ENST00000628023 SAPCD2Q86UD0 394 aa22.34■■□□□ 1.17
CLN3-239ENST00000628023 LPIN2Q92539 896 aa22.34■■□□□ 1.17
CLN3-239ENST00000628023 IRS2Q9Y4H2 1338 aa22.33■■□□□ 1.17
CLN3-239ENST00000628023 MAP2K2P36507 400 aa22.33■■□□□ 1.17
CLN3-239ENST00000628023 GYG1P46976 350 aa22.33■■□□□ 1.17
CLN3-239ENST00000628023 SAMD7Q7Z3H4 446 aa22.33■■□□□ 1.17
CLN3-239ENST00000628023 HHIPL1Q96JK4 782 aa22.33■■□□□ 1.17
CLN3-239ENST00000628023 CD209Q9NNX6 404 aa22.33■■□□□ 1.17
CLN3-239ENST00000628023 AKAP2Q9Y2D5 859 aa22.33■■□□□ 1.17
CLN3-239ENST00000628023 SHTN1A0MZ66 631 aa22.32■■□□□ 1.16
CLN3-239ENST00000628023 HIBADHP31937 336 aaKnown RBP22.32■■□□□ 1.16
CLN3-239ENST00000628023 TBC1D10BQ4KMP7 808 aaPredicted RBP22.32■■□□□ 1.16
CLN3-239ENST00000628023 HSP90AB4PQ58FF6 505 aa22.32■■□□□ 1.16
CLN3-239ENST00000628023 DCPSQ96C86 337 aaKnown RBP22.32■■□□□ 1.16
CLN3-239ENST00000628023 EXOC6BQ9Y2D4 811 aa22.32■■□□□ 1.16
CLN3-239ENST00000628023 NOP58Q9Y2X3 529 aaKnown RBP22.32■■□□□ 1.16
CLN3-239ENST00000628023 USP17L3A6NCW0 530 aa22.31■■□□□ 1.16
CLN3-239ENST00000628023 USP17L4A6NCW7 530 aa22.31■■□□□ 1.16
CLN3-239ENST00000628023 VIL1P09327 827 aaKnown RBP22.31■■□□□ 1.16
CLN3-239ENST00000628023 FGFR2P21802 821 aa22.31■■□□□ 1.16
CLN3-239ENST00000628023 RBM26Q5T8P6 1007 aaKnown RBP22.31■■□□□ 1.16
CLN3-239ENST00000628023 USP17L1Q7RTZ2 530 aa22.31■■□□□ 1.16
CLN3-239ENST00000628023 USP48Q86UV5 1035 aa22.31■■□□□ 1.16
CLN3-239ENST00000628023 ERC1Q8IUD2 1116 aa22.31■■□□□ 1.16
CLN3-239ENST00000628023 SIRT2Q8IXJ6 389 aa22.31■■□□□ 1.16
CLN3-239ENST00000628023 KCNQ5Q9NR82 932 aa22.31■■□□□ 1.16
CLN3-239ENST00000628023 HSPA8P11142 646 aaKnown RBP22.3■■□□□ 1.16
CLN3-239ENST00000628023 IRX6P78412 446 aaPredicted RBP22.3■■□□□ 1.16
CLN3-239ENST00000628023 KRT26Q7Z3Y9 468 aa22.3■■□□□ 1.16
CLN3-239ENST00000628023 SCN9AQ15858 1988 aa22.3■■□□□ 1.16
CLN3-239ENST00000628023 A0A1B0GUL7 405 aa22.29■■□□□ 1.16
CLN3-239ENST00000628023 FRAT2O75474 233 aaPredicted RBP22.29■■□□□ 1.16
CLN3-239ENST00000628023 SASH1O94885 1247 aa22.29■■□□□ 1.16
CLN3-239ENST00000628023 EXOC6Q8TAG9 804 aa22.29■■□□□ 1.16
CLN3-239ENST00000628023 FAM84BQ96KN1 310 aaPredicted RBP22.29■■□□□ 1.16
CLN3-239ENST00000628023 APBB1O00213 710 aa22.28■■□□□ 1.16
CLN3-239ENST00000628023 CENPBP07199 599 aaPredicted RBP22.28■■□□□ 1.16
CLN3-239ENST00000628023 BCAMP50895 628 aa22.28■■□□□ 1.16
CLN3-239ENST00000628023 GTF2IP78347 998 aa22.28■■□□□ 1.16
CLN3-239ENST00000628023 AAMPQ13685 434 aa22.28■■□□□ 1.16
CLN3-239ENST00000628023 KIF4BQ2VIQ3 1234 aa22.28■■□□□ 1.16
CLN3-239ENST00000628023 AGBL3Q8NEM8 1001 aa22.28■■□□□ 1.16
CLN3-239ENST00000628023 NEUROD6Q96NK8 337 aa22.28■■□□□ 1.16
CLN3-239ENST00000628023 ZNF609O15014 1411 aa22.28■■□□□ 1.16
CLN3-239ENST00000628023 IL1R1P14778 569 aa22.27■■□□□ 1.16
CLN3-239ENST00000628023 TIMM10P62072 90 aa22.27■■□□□ 1.16
CLN3-239ENST00000628023 STRIP1Q5VSL9 837 aa22.27■■□□□ 1.16
CLN3-239ENST00000628023 TTLL5Q6EMB2 1281 aa22.27■■□□□ 1.16
CLN3-239ENST00000628023 RSBN1LQ6PCB5 846 aaPredicted RBP22.27■■□□□ 1.16
CLN3-239ENST00000628023 FBXO33Q7Z6M2 555 aa22.27■■□□□ 1.16
CLN3-239ENST00000628023 IQSEC3Q9UPP2 1182 aaPredicted RBP22.27■■□□□ 1.16
CLN3-239ENST00000628023 PCDHB15Q9Y5E8 787 aa22.27■■□□□ 1.16
CLN3-239ENST00000628023 CA12O43570 354 aa22.26■■□□□ 1.15
CLN3-239ENST00000628023 AOC2O75106 756 aa22.26■■□□□ 1.15
CLN3-239ENST00000628023 ADORA1P30542 326 aa22.26■■□□□ 1.15
CLN3-239ENST00000628023 GORABQ5T7V8 394 aa22.26■■□□□ 1.15
CLN3-239ENST00000628023 SULF1Q8IWU6 871 aa22.26■■□□□ 1.15
CLN3-239ENST00000628023 C2orf69Q8N8R5 385 aa22.26■■□□□ 1.15
CLN3-239ENST00000628023 GNL3LQ9NVN8 582 aaKnown RBP22.26■■□□□ 1.15
CLN3-239ENST00000628023 JAG2Q9Y219 1238 aa22.26■■□□□ 1.15
CLN3-239ENST00000628023 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.26■■□□□ 1.15
CLN3-239ENST00000628023 PSME4Q14997 1843 aa22.25■■□□□ 1.15
CLN3-239ENST00000628023 HUNKP57058 714 aa22.25■■□□□ 1.15
CLN3-239ENST00000628023 TNNI3KQ59H18 835 aa22.25■■□□□ 1.15
CLN3-239ENST00000628023 TDRD7Q8NHU6 1098 aaKnown RBP22.25■■□□□ 1.15
CLN3-239ENST00000628023 BCL11AQ9H165 835 aa22.25■■□□□ 1.15
CLN3-239ENST00000628023 FPGT-TNNI3KV9GXZ4 949 aa22.25■■□□□ 1.15
CLN3-239ENST00000628023 ARAP2Q8WZ64 1704 aa22.25■■□□□ 1.15
CLN3-239ENST00000628023 THSD7BQ9C0I4 1608 aa22.24■■□□□ 1.15
CLN3-239ENST00000628023 RAB11FIP3O75154 756 aa22.24■■□□□ 1.15
CLN3-239ENST00000628023 EGFRP00533 1210 aa22.24■■□□□ 1.15
CLN3-239ENST00000628023 CHAF1AQ13111 956 aaPredicted RBP22.24■■□□□ 1.15
CLN3-239ENST00000628023 NOGQ13253 232 aa22.24■■□□□ 1.15
CLN3-239ENST00000628023 DACT2Q5SW24 774 aa22.24■■□□□ 1.15
CLN3-239ENST00000628023 KIF1BPQ96EK5 621 aa22.24■■□□□ 1.15
CLN3-239ENST00000628023 XAGE2Q96GT9 111 aa22.24■■□□□ 1.15
CLN3-239ENST00000628023 GPR108Q9NPR9 543 aa22.24■■□□□ 1.15
CLN3-239ENST00000628023 MYO3BQ8WXR4 1341 aa22.24■■□□□ 1.15
CLN3-239ENST00000628023 RHPN1Q8TCX5 695 aa22.23■■□□□ 1.15
CLN3-239ENST00000628023 MXD3Q9BW11 206 aa22.23■■□□□ 1.15
CLN3-239ENST00000628023 GBA2Q9HCG7 927 aaPredicted RBP22.23■■□□□ 1.15
CLN3-239ENST00000628023 POLR2AP24928 1970 aaKnown RBP22.22■■□□□ 1.15
CLN3-239ENST00000628023 USP17L8P0C7I0 530 aa22.22■■□□□ 1.15
CLN3-239ENST00000628023 PHKA1P46020 1223 aa22.22■■□□□ 1.15
CLN3-239ENST00000628023 ZNF280AP59817 542 aaPredicted RBP22.22■■□□□ 1.15
CLN3-239ENST00000628023 IL1RAPL2Q9NP60 686 aa22.22■■□□□ 1.15
CLN3-239ENST00000628023 GGA3Q9NZ52 723 aa22.22■■□□□ 1.15
CLN3-239ENST00000628023 ADM5C9JUS6 153 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms