RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 RTL9Q8NET4 1388 aa11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 MAP4K4O95819 1239 aaPredicted RBP11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 HSPA8P11142 646 aaKnown RBP11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 HSP90B1P14625 803 aaKnown RBP11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 MAP2K2P36507 400 aa11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 VGLL2Q8N8G2 317 aa11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 ZC3H15Q8WU90 426 aaKnown RBP11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 GPATCH3Q96I76 525 aa11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 IL25Q9H293 177 aa11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 GPR108Q9NPR9 543 aa11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 FOXD4L1Q9NU39 408 aa11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 FBXO3Q9UK99 471 aa11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 PCNTO95613 3336 aa11.58□□□□□ -0.56
PDLIM5-223ENST00000627587 GLRX3O76003 335 aaKnown RBP11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 TNIP1Q15025 636 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 HHIPL1Q96JK4 782 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 CAPNS2Q96L46 248 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 DBNDD2Q9BQY9 259 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 SEC31BQ9NQW1 1179 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 GPRC5DQ9NZD1 345 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 PGAP2Q9UHJ9 254 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 TLL2Q9Y6L7 1015 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 ERC2O15083 957 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 EIF5BO60841 1220 aaKnown RBP11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 CHMLP26374 656 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 TIMM10P62072 90 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 TAF7LQ5H9L4 462 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 CASC1Q6TDU7 716 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 DPP8Q6V1X1 898 aaPredicted RBP11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 DDX46Q7L014 1031 aaKnown RBP11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 MPNDQ8N594 471 aa11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 GPR101Q96P66 508 aaPredicted RBP11.57□□□□□ -0.56
PDLIM5-223ENST00000627587 ANKRD18BA2A2Z9 1011 aa11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 TRIM6-TRIM34B2RNG4 842 aa11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 CA12O43570 354 aa11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 CXCL9Q07325 125 aa11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 CIAPIN1Q6FI81 312 aa11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 RILPL2Q969X0 211 aa11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 TRPM7Q96QT4 1865 aa11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 C22orf23Q9BZE7 217 aa11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 ZBTB12Q9Y330 459 aaPredicted RBP11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 MYO5AQ9Y4I1 1855 aaKnown RBP11.56□□□□□ -0.56
PDLIM5-223ENST00000627587 A0A1B0GUL7 405 aa11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 ATP5JP18859 108 aa11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 RBM25P49756 843 aaKnown RBP11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 KIAA2012Q0VF49 1180 aa11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 AOC3Q16853 763 aa11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 CST9Q5W186 159 aa11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 PAXIP1Q6ZW49 1069 aaPredicted RBP11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 IPO9Q96P70 1041 aaKnown RBP11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 KIF2CQ99661 725 aa11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 COL4A5P29400 1685 aa11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 GRAPQ13588 217 aa11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 SF3B3Q15393 1217 aaKnown RBP11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 LDHAL6AQ6ZMR3 332 aa11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 GRAPLQ8TC17 118 aaPredicted RBP11.55□□□□□ -0.56
PDLIM5-223ENST00000627587 LTBP1Q14766 1721 aa11.54□□□□□ -0.56
PDLIM5-223ENST00000627587 CDC37L1Q7L3B6 337 aa11.54□□□□□ -0.56
PDLIM5-223ENST00000627587 EDC3Q96F86 508 aaKnown RBP11.54□□□□□ -0.56
PDLIM5-223ENST00000627587 ABHD8Q96I13 439 aa11.54□□□□□ -0.56
PDLIM5-223ENST00000627587 ESYT1Q9BSJ8 1104 aa11.54□□□□□ -0.56
PDLIM5-223ENST00000627587 USP26Q9BXU7 913 aa11.54□□□□□ -0.56
PDLIM5-223ENST00000627587 BOLA2Q9H3K6 86 aa11.54□□□□□ -0.56
PDLIM5-223ENST00000627587 MYH7P12883 1935 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 H7C1D1 291 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 ADORA1P30542 326 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 GMPSP49915 693 aaPredicted RBP11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 CCDC152Q4G0S7 254 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 CYP4F22Q6NT55 531 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 CEP126Q9P2H0 1117 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 NDUFB9Q9Y6M9 179 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 TRAF5O00463 557 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 CELF2O95319 508 aaKnown RBP11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 SAPCD2Q86UD0 394 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 DPF2Q92785 391 aa11.53□□□□□ -0.56
PDLIM5-223ENST00000627587 PDE8BO95263 885 aa11.52□□□□□ -0.57
PDLIM5-223ENST00000627587 FGFR2P21802 821 aa11.52□□□□□ -0.57
PDLIM5-223ENST00000627587 METTL24Q5JXM2 366 aa11.52□□□□□ -0.57
PDLIM5-223ENST00000627587 EVI5LQ96CN4 794 aa11.52□□□□□ -0.57
PDLIM5-223ENST00000627587 NEUROD6Q96NK8 337 aa11.52□□□□□ -0.57
PDLIM5-223ENST00000627587 HAUS7Q99871 368 aa11.52□□□□□ -0.57
PDLIM5-223ENST00000627587 CNNM1Q9NRU3 951 aa11.52□□□□□ -0.57
PDLIM5-223ENST00000627587 CNOT7Q9UIV1 285 aaKnown RBP11.52□□□□□ -0.57
PDLIM5-223ENST00000627587 THSD7BQ9C0I4 1608 aa11.52□□□□□ -0.57
PDLIM5-223ENST00000627587 SNAP23O00161 211 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 FMR1Q06787 632 aaKnown RBP eCLIP11.51□□□□□ -0.573e-9■■■■■ 33
PDLIM5-223ENST00000627587 XAGE2Q96GT9 111 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 AKAP2Q9Y2D5 859 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 DOCK2Q92608 1830 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 SGSM2O43147 1006 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 RAD17O75943 681 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 CHGBP05060 677 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 SCARF1Q14162 830 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 HELBQ8NG08 1087 aaPredicted RBP11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 CELF1Q92879 486 aaKnown RBP11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 DDRGK1Q96HY6 314 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 EYA3Q99504 573 aa11.51□□□□□ -0.57
PDLIM5-223ENST00000627587 MROH5Q6ZUA9 1318 aa11.5□□□□□ -0.57
PDLIM5-223ENST00000627587 WTIPA6NIX2 430 aaPredicted RBP11.5□□□□□ -0.57
PDLIM5-223ENST00000627587 RPS12P25398 132 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms