RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 MYD88Q99836 296 aa10.06□□□□□ -0.8
VCL-206ENST00000623461 NPC1L1Q9UHC9 1359 aa10.06□□□□□ -0.8
VCL-206ENST00000623461 ZNF76P36508 570 aa10.06□□□□□ -0.8
VCL-206ENST00000623461 UBLCP1Q8WVY7 318 aaPredicted RBP10.06□□□□□ -0.8
VCL-206ENST00000623461 LUC7L3O95232 432 aaKnown RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 PAK2Q13177 524 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 MIPOL1Q8TD10 442 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 GPT2Q8TD30 523 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 KRT23Q9C075 422 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 MICU3Q86XE3 530 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 MLKLQ8NB16 471 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 SREK1Q8WXA9 508 aaKnown RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 VIMP08670 466 aaKnown RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 CEP128Q6ZU80 1094 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 NAP1L3Q99457 506 aaPredicted RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 CNNM2Q9H8M5 875 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 A0A087WUV0 522 aaPredicted RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 ETF1P62495 437 aaKnown RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 NMIQ13287 307 aaPredicted RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 MTMR3Q13615 1198 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 AMOTQ4VCS5 1084 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 SH2D4BQ5SQS7 431 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 FCHSD1Q86WN1 690 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 EXOC4Q96A65 974 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 CCDC51Q96ER9 411 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 SPAG5Q96R06 1193 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 TSKSQ9UJT2 592 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 RBBP5Q15291 538 aaKnown RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 DHX32Q7L7V1 743 aaKnown RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 TXNDC2Q86VQ3 553 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 NUDT16Q96DE0 195 aaKnown RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 NUP58Q9BVL2 599 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 NOL3O60936 208 aaKnown RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 VAMP4O75379 141 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 RABGGTAQ92696 567 aa10.05□□□□□ -0.8
VCL-206ENST00000623461 SPATS2LQ9NUQ6 558 aaKnown RBP10.05□□□□□ -0.8
VCL-206ENST00000623461 MINDY4BA8MYZ0 360 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 CIB2O75838 187 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 SYTL4Q96C24 671 aaPredicted RBP10.04□□□□□ -0.8
VCL-206ENST00000623461 SEC62Q99442 399 aaKnown RBP10.04□□□□□ -0.8
VCL-206ENST00000623461 VEZTQ9HBM0 779 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 PLCB1Q9NQ66 1216 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 SSH2Q76I76 1423 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 KIF24Q5T7B8 1368 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 ATP2A1O14983 1001 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 RPS6KB1P23443 525 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 CTNNA2P26232 953 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 MFSD6Q6ZSS7 791 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 PPP1R14CQ8TAE6 165 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 IQCGQ9H095 443 aaKnown RBP10.04□□□□□ -0.8
VCL-206ENST00000623461 TRIM75PA6NK02 468 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 MPHOSPH10O00566 681 aaKnown RBP10.04□□□□□ -0.8
VCL-206ENST00000623461 JAKMIP2Q96AA8 810 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 NKIRAS1Q9NYS0 192 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 RAPGEF6Q8TEU7 1601 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 DHX58Q96C10 678 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 JRKLQ9Y4A0 524 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 CCDC82Q8N4S0 544 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 SNAPC4Q5SXM2 1469 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 UGGT2Q9NYU1 1516 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 CAPS2Q9BXY5 557 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 A0A1B0GVL5 298 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 HPDP32754 393 aaPredicted RBP10.04□□□□□ -0.8
VCL-206ENST00000623461 SNCBQ16143 134 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 MMRN2Q9H8L6 949 aa10.04□□□□□ -0.8
VCL-206ENST00000623461 POLR1AO95602 1720 aaPredicted RBP10.03□□□□□ -0.8
VCL-206ENST00000623461 ALDH1L1O75891 902 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 KRT13P13646 458 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 TAOK1Q7L7X3 1001 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 RNF168Q8IYW5 571 aaPredicted RBP10.03□□□□□ -0.8
VCL-206ENST00000623461 PAF1Q8N7H5 531 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 MAP3K2Q9Y2U5 619 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 SNX14Q9Y5W7 946 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 PUS7Q96PZ0 661 aaKnown RBP10.03□□□□□ -0.8
VCL-206ENST00000623461 IGHMBP2P38935 993 aaKnown RBP10.03□□□□□ -0.8
VCL-206ENST00000623461 GNGT1P63211 74 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 APBA1Q02410 837 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 TERF2Q15554 542 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 CCDC110Q8TBZ0 833 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 SOS1Q07889 1333 aaPredicted RBP10.03□□□□□ -0.8
VCL-206ENST00000623461 TCERG1LQ5VWI1 586 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 RNF10Q8N5U6 811 aaKnown RBP10.03□□□□□ -0.8
VCL-206ENST00000623461 UBA5Q9GZZ9 404 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.03□□□□□ -0.8
VCL-206ENST00000623461 PER1O15534 1290 aaPredicted RBP10.03□□□□□ -0.8
VCL-206ENST00000623461 RANBP6O60518 1105 aaKnown RBP10.03□□□□□ -0.8
VCL-206ENST00000623461 RTN1Q16799 776 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 TCEANC2Q96MN5 208 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 E7EVH7 732 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 WTAPQ15007 396 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 SMARCC2Q8TAQ2 1214 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 RAB3IPQ96QF0 476 aaPredicted RBP10.03□□□□□ -0.8
VCL-206ENST00000623461 KCNK9Q9NPC2 374 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 PYCARDQ9ULZ3 195 aa10.03□□□□□ -0.8
VCL-206ENST00000623461 PRC1O43663 620 aa10.02□□□□□ -0.8
VCL-206ENST00000623461 NAA16Q6N069 864 aaPredicted RBP10.02□□□□□ -0.8
VCL-206ENST00000623461 EMILIN1Q9Y6C2 1016 aa10.02□□□□□ -0.8
VCL-206ENST00000623461 COL17A1Q9UMD9 1497 aaPredicted RBP10.02□□□□□ -0.8
VCL-206ENST00000623461 USP5P45974 858 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 ATP2B2Q01814 1243 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms