RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PICK1Q9NRD5 415 aa9.09□□□□□ -0.95
VPS11-209ENST00000622309 POTEB2H3BUK9 544 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 CLNS1AP54105 237 aaKnown RBP9.08□□□□□ -0.96
VPS11-209ENST00000622309 C11orf57Q6ZUT1 292 aaPredicted RBP9.08□□□□□ -0.96
VPS11-209ENST00000622309 RSRC2Q7L4I2 434 aaKnown RBP9.08□□□□□ -0.96
VPS11-209ENST00000622309 VTI1AQ96AJ9 217 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 CDK19Q9BWU1 502 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 TRIM35Q9UPQ4 493 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 ZSCAN12O43309 604 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 CAND2O75155 1236 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 NR1I2O75469 434 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 GCKP35557 465 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 GNG11P61952 73 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 DDX46Q7L014 1031 aaKnown RBP9.08□□□□□ -0.96
VPS11-209ENST00000622309 IQCA1Q86XH1 822 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 API5Q9BZZ5 524 aaKnown RBP9.08□□□□□ -0.96
VPS11-209ENST00000622309 ZSWIM4Q9H7M6 989 aa9.08□□□□□ -0.96
VPS11-209ENST00000622309 UBR1Q8IWV7 1749 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 UNCXA6NJT0 531 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 AK2P54819 239 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 INHBEP58166 350 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 DDR1Q08345 913 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 TBC1D8BQ0IIM8 1120 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 ZC3H12AQ5D1E8 599 aaKnown RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 LARP1BQ659C4 914 aaKnown RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 NUTM1Q86Y26 1132 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 HNRNPLLQ8WVV9 542 aaKnown RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 NAT10Q9H0A0 1025 aaKnown RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 CD248Q9HCU0 757 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 TFIP11Q9UBB9 837 aaKnown RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 CTDP1Q9Y5B0 961 aaPredicted RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 PIK3C2BO00750 1634 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 JCADQ9P266 1359 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 SBNO2Q9Y2G9 1366 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 SHTN1A0MZ66 631 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 KIAA0754O94854 1291 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 RBBP5Q15291 538 aaKnown RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 BEND6Q5SZJ8 279 aaPredicted RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 TRIM65Q6PJ69 517 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 RPAP2Q8IXW5 612 aaPredicted RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 CEP57L1Q8IYX8 460 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 MRPL50Q8N5N7 158 aaKnown RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 ARL10Q8N8L6 244 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 MICAL1Q8TDZ2 1067 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 ERCC4Q92889 916 aaPredicted RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 SMARCC1Q92922 1105 aaPredicted RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 ZKSCAN4Q969J2 545 aaPredicted RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 A0A1W2PP64 1363 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 ANKRD33BA6NCL7 494 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 CCNHP51946 323 aaPredicted RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 PDE1AP54750 535 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 RWDD2BP57060 319 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 MAP3K9P80192 1104 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 PREPLQ4J6C6 727 aaPredicted RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 ARMCX5Q6P1M9 558 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 FAM173BQ6P4H8 233 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 MSL3Q8N5Y2 521 aaKnown RBP9.07□□□□□ -0.96
VPS11-209ENST00000622309 ANKRD44Q8N8A2 993 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 CEP112Q8N8E3 955 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 GBP3Q9H0R5 595 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 ANO10Q9NW15 660 aa9.07□□□□□ -0.96
VPS11-209ENST00000622309 EPB41L2O43491 1005 aaKnown RBP9.06□□□□□ -0.96
VPS11-209ENST00000622309 ATP2B2Q01814 1243 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 WWC2Q6AWC2 1192 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 ZNF280DQ6N043 979 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 AOPEPQ8N6M6 819 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 KCNV2Q8TDN2 545 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 TULP4Q9NRJ4 1543 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 FRMD3A2A2Y4 597 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 PES1O00541 588 aaKnown RBP9.06□□□□□ -0.96
VPS11-209ENST00000622309 DTNBO60941 627 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 KCNA6P17658 529 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 PSME1Q06323 249 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 NAA25Q14CX7 972 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 ZNF772Q68DY9 489 aaPredicted RBP9.06□□□□□ -0.96
VPS11-209ENST00000622309 ZNF483Q8TF39 744 aaPredicted RBP9.06□□□□□ -0.96
VPS11-209ENST00000622309 FBXW7Q969H0 707 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 UTP14AQ9BVJ6 771 aaKnown RBP9.06□□□□□ -0.96
VPS11-209ENST00000622309 CENPHQ9H3R5 247 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 PPP1R1BQ9UD71 204 aaPredicted RBP9.06□□□□□ -0.96
VPS11-209ENST00000622309 TMEM94Q12767 1356 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 ROBO1Q9Y6N7 1651 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 XIRP1Q702N8 1843 aaKnown RBP9.06□□□□□ -0.96
VPS11-209ENST00000622309 ABCC4O15439 1325 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 CHMP4BP1P59074 171 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 TRAF1Q13077 416 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 CASP8Q14790 479 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 TSPAN18Q96SJ8 248 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 MRFAP1Q9Y605 127 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 SETBP1Q9Y6X0 1596 aa9.06□□□□□ -0.96
VPS11-209ENST00000622309 YTHDC2Q9H6S0 1430 aaKnown RBP9.05□□□□□ -0.96
VPS11-209ENST00000622309 RNF40O75150 1001 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 CHMLP26374 656 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 MKRN3Q13064 507 aaKnown RBP9.05□□□□□ -0.96
VPS11-209ENST00000622309 RUFY3Q7L099 469 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 CEP57Q86XR8 500 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 CCDC26Q8TAB7 109 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 UPF1Q92900 1129 aaKnown RBP eCLIP9.05□□□□□ -0.96
VPS11-209ENST00000622309 TATDN2Q93075 761 aa9.05□□□□□ -0.96
VPS11-209ENST00000622309 CLIC6Q96NY7 704 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms