RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 MYH3P11055 1940 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 ATMINO43313 823 aaPredicted RBP9.76□□□□□ -0.85
CPNE3-209ENST00000620393 MAP4K4O95819 1239 aaPredicted RBP9.76□□□□□ -0.85
CPNE3-209ENST00000620393 KLRK1P26718 216 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 SCARF1Q14162 830 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 CCDC93Q567U6 631 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 CNTROBQ8N137 903 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 SUPT20HQ8NEM7 779 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 RILPL2Q969X0 211 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 EVI5LQ96CN4 794 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 EYA3Q99504 573 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 SYT17Q9BSW7 474 aa9.76□□□□□ -0.85
CPNE3-209ENST00000620393 FHDC1Q9C0D6 1143 aaPredicted RBP9.76□□□□□ -0.85
CPNE3-209ENST00000620393 ANKRD31Q8N7Z5 1873 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 SEMA3EO15041 775 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 MCAMP43121 646 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 ZAP70P43403 619 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 FKBP4Q02790 459 aaKnown RBP eCLIP9.75□□□□□ -0.85
CPNE3-209ENST00000620393 WASHC4Q2M389 1173 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 ZNF804AQ7Z570 1209 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 TICAM2Q86XR7 235 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 SPATA5Q8NB90 893 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 TDRD7Q8NHU6 1098 aaKnown RBP9.75□□□□□ -0.85
CPNE3-209ENST00000620393 GPR101Q96P66 508 aaPredicted RBP9.75□□□□□ -0.85
CPNE3-209ENST00000620393 PSMD1Q99460 953 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 DNAJC2Q99543 621 aaKnown RBP9.75□□□□□ -0.85
CPNE3-209ENST00000620393 VPS33BQ9H267 617 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 CD209Q9NNX6 404 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 SNRKQ9NRH2 765 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 HMG20BQ9P0W2 317 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 DENND2AQ9ULE3 1009 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 BCS1LQ9Y276 419 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 PCDHB13Q9Y5F0 798 aa9.75□□□□□ -0.85
CPNE3-209ENST00000620393 GOLIM4O00461 696 aa9.74□□□□□ -0.85
CPNE3-209ENST00000620393 RIMBP2O15034 1052 aa9.74□□□□□ -0.85
CPNE3-209ENST00000620393 IL1R1P14778 569 aa9.74□□□□□ -0.85
CPNE3-209ENST00000620393 RASGRF1Q13972 1273 aa9.74□□□□□ -0.85
CPNE3-209ENST00000620393 EDC3Q96F86 508 aaKnown RBP9.74□□□□□ -0.85
CPNE3-209ENST00000620393 COA1Q9GZY4 146 aa9.74□□□□□ -0.85
CPNE3-209ENST00000620393 PAG1Q9NWQ8 432 aa9.74□□□□□ -0.85
CPNE3-209ENST00000620393 NDUFB9Q9Y6M9 179 aa9.74□□□□□ -0.85
CPNE3-209ENST00000620393 MED23Q9ULK4 1368 aa9.74□□□□□ -0.85
CPNE3-209ENST00000620393 CDC45O75419 566 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 FRAT2O75474 233 aaPredicted RBP9.73□□□□□ -0.85
CPNE3-209ENST00000620393 CYP2E1P05181 493 aaPredicted RBP9.73□□□□□ -0.85
CPNE3-209ENST00000620393 KIAA2012Q0VF49 1180 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 TTF1Q15361 905 aaPredicted RBP9.73□□□□□ -0.85
CPNE3-209ENST00000620393 C8orf34Q49A92 452 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 PI16Q6UXB8 463 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 PODNQ7Z5L7 613 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 KBTBD3Q8NAB2 608 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 BACH2Q9BYV9 841 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 ANTXR1Q9H6X2 564 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 WWC3Q9ULE0 1092 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 IQSEC3Q9UPP2 1182 aaPredicted RBP9.73□□□□□ -0.85
CPNE3-209ENST00000620393 PDS5AQ29RF7 1337 aaKnown RBP9.73□□□□□ -0.85
CPNE3-209ENST00000620393 SNED1Q8TER0 1413 aa9.73□□□□□ -0.85
CPNE3-209ENST00000620393 TAF1P21675 1872 aa9.72□□□□□ -0.85
CPNE3-209ENST00000620393 G3V3G9 751 aa9.72□□□□□ -0.85
CPNE3-209ENST00000620393 HIP1O00291 1037 aa9.72□□□□□ -0.85
CPNE3-209ENST00000620393 C7P10643 843 aa9.72□□□□□ -0.85
CPNE3-209ENST00000620393 CHMLP26374 656 aa9.72□□□□□ -0.85
CPNE3-209ENST00000620393 DOK7Q18PE1 504 aa9.72□□□□□ -0.85
CPNE3-209ENST00000620393 TBC1D9Q6ZT07 1266 aa9.72□□□□□ -0.85
CPNE3-209ENST00000620393 IGSF3O75054 1194 aa9.71□□□□□ -0.86
CPNE3-209ENST00000620393 TIE1P35590 1138 aa9.71□□□□□ -0.86
CPNE3-209ENST00000620393 GSE1Q14687 1217 aa9.71□□□□□ -0.86
CPNE3-209ENST00000620393 LRRFIP1Q32MZ4 808 aaKnown RBP9.71□□□□□ -0.86
CPNE3-209ENST00000620393 CASC1Q6TDU7 716 aa9.71□□□□□ -0.86
CPNE3-209ENST00000620393 WDR66Q8TBY9 1149 aa9.71□□□□□ -0.86
CPNE3-209ENST00000620393 SLC39A7Q92504 469 aa9.71□□□□□ -0.86
CPNE3-209ENST00000620393 FSD1Q9BTV5 496 aa9.71□□□□□ -0.86
CPNE3-209ENST00000620393 PIH1D3Q9NQM4 214 aaKnown RBP9.71□□□□□ -0.86
CPNE3-209ENST00000620393 SLX4Q8IY92 1834 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 NFKBIEO00221 500 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 RNF113AO15541 343 aaKnown RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 PPIP5K2O43314 1243 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 EIF5BO60841 1220 aaKnown RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 ZFYP08048 801 aaPredicted RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 ATN1P54259 1190 aaPredicted RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 MAP3K12Q12852 859 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 CHAF1AQ13111 956 aaPredicted RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 AOC3Q16853 763 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 SPTY2D1Q68D10 685 aaPredicted RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 TTLL5Q6EMB2 1281 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 ZGPATQ8N5A5 531 aaKnown RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 OTUD5Q96G74 571 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 TAOK3Q9H2K8 898 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 ZNF277Q9NRM2 450 aaPredicted RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 BMP2KQ9NSY1 1161 aaPredicted RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 LRP2BPQ9P2M1 347 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 FAM205AQ6ZU69 1335 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 SALL1Q9NSC2 1324 aa9.7□□□□□ -0.86
CPNE3-209ENST00000620393 COL11A2P13942 1736 aaPredicted RBP9.7□□□□□ -0.86
CPNE3-209ENST00000620393 ECE2O60344 883 aa9.69□□□□□ -0.86
CPNE3-209ENST00000620393 IDH1O75874 414 aaKnown RBP9.69□□□□□ -0.86
CPNE3-209ENST00000620393 IARSP41252 1262 aaKnown RBP9.69□□□□□ -0.86
CPNE3-209ENST00000620393 GTF2IP78347 998 aa9.69□□□□□ -0.86
CPNE3-209ENST00000620393 UBE3CQ15386 1083 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms