RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ZNF804AQ7Z570 1209 aa16.71■□□□□ 0.27
LINC00540-202ENST00000616974 KIAA0825Q8IV33 1275 aa16.71■□□□□ 0.27
LINC00540-202ENST00000616974 CHAF1AQ13111 956 aaPredicted RBP16.7■□□□□ 0.26
LINC00540-202ENST00000616974 OS9Q13438 667 aaPredicted RBP16.7■□□□□ 0.26
LINC00540-202ENST00000616974 TNIP1Q15025 636 aa16.7■□□□□ 0.26
LINC00540-202ENST00000616974 XAGE2Q96GT9 111 aa16.7■□□□□ 0.26
LINC00540-202ENST00000616974 NEUROD6Q96NK8 337 aa16.7■□□□□ 0.26
LINC00540-202ENST00000616974 FBXO3Q9UK99 471 aa16.7■□□□□ 0.26
LINC00540-202ENST00000616974 SMARCA5O60264 1052 aaPredicted RBP16.7■□□□□ 0.26
LINC00540-202ENST00000616974 SCARF1Q14162 830 aa16.7■□□□□ 0.26
LINC00540-202ENST00000616974 EAF2Q96CJ1 260 aaPredicted RBP16.7■□□□□ 0.26
LINC00540-202ENST00000616974 DBNDD2Q9BQY9 259 aa16.7■□□□□ 0.26
LINC00540-202ENST00000616974 MAP1SQ66K74 1059 aaPredicted RBP16.69■□□□□ 0.26
LINC00540-202ENST00000616974 CCDC8Q9H0W5 538 aaPredicted RBP16.69■□□□□ 0.26
LINC00540-202ENST00000616974 NDUFB9Q9Y6M9 179 aa16.69■□□□□ 0.26
LINC00540-202ENST00000616974 IFIT1P09914 478 aaKnown RBP16.69■□□□□ 0.26
LINC00540-202ENST00000616974 SLC5A1P13866 664 aa16.69■□□□□ 0.26
LINC00540-202ENST00000616974 HTRA3P83110 453 aa16.69■□□□□ 0.26
LINC00540-202ENST00000616974 TNNI3KQ59H18 835 aa16.69■□□□□ 0.26
LINC00540-202ENST00000616974 STRIP1Q5VSL9 837 aa16.69■□□□□ 0.26
LINC00540-202ENST00000616974 CCDC102BQ68D86 513 aa16.69■□□□□ 0.26
LINC00540-202ENST00000616974 RPAP2Q8IXW5 612 aaPredicted RBP16.69■□□□□ 0.26
LINC00540-202ENST00000616974 FPGT-TNNI3KV9GXZ4 949 aa16.69■□□□□ 0.26
LINC00540-202ENST00000616974 VPS37DQ86XT2 251 aa16.68■□□□□ 0.26
LINC00540-202ENST00000616974 DBNLQ9UJU6 430 aaKnown RBP16.68■□□□□ 0.26
LINC00540-202ENST00000616974 TOMM70O94826 608 aa16.67■□□□□ 0.26
LINC00540-202ENST00000616974 RASGRF1Q13972 1273 aa16.67■□□□□ 0.26
LINC00540-202ENST00000616974 LMOD1P29536 600 aaPredicted RBP16.67■□□□□ 0.26
LINC00540-202ENST00000616974 IQCA1LA6NCM1 817 aa16.66■□□□□ 0.26
LINC00540-202ENST00000616974 C1QTNF8P60827 252 aa16.66■□□□□ 0.26
LINC00540-202ENST00000616974 NBPF9Q3BBW0 867 aa16.66■□□□□ 0.26
LINC00540-202ENST00000616974 CAVIN4Q5BKX8 364 aa16.66■□□□□ 0.26
LINC00540-202ENST00000616974 MFSD14BQ5SR56 506 aa16.66■□□□□ 0.26
LINC00540-202ENST00000616974 RHPN1Q8TCX5 695 aa16.66■□□□□ 0.26
LINC00540-202ENST00000616974 DPF2Q92785 391 aa16.66■□□□□ 0.26
LINC00540-202ENST00000616974 CLEC11AQ9Y240 323 aa16.66■□□□□ 0.26
LINC00540-202ENST00000616974 MYH2Q9UKX2 1941 aa16.66■□□□□ 0.26
LINC00540-202ENST00000616974 FAM205AQ6ZU69 1335 aa16.65■□□□□ 0.26
LINC00540-202ENST00000616974 TRAF5O00463 557 aa16.65■□□□□ 0.26
LINC00540-202ENST00000616974 FRAT2O75474 233 aaPredicted RBP16.65■□□□□ 0.26
LINC00540-202ENST00000616974 C16orf71Q8IYS4 520 aaPredicted RBP16.65■□□□□ 0.26
LINC00540-202ENST00000616974 SNRKQ9NRH2 765 aa16.65■□□□□ 0.26
LINC00540-202ENST00000616974 ADARB2Q9NS39 739 aaKnown RBP16.65■□□□□ 0.26
LINC00540-202ENST00000616974 USP17L8P0C7I0 530 aa16.64■□□□□ 0.25
LINC00540-202ENST00000616974 MCAMP43121 646 aa16.64■□□□□ 0.25
LINC00540-202ENST00000616974 AGBL3Q8NEM8 1001 aa16.64■□□□□ 0.25
LINC00540-202ENST00000616974 PRDX5P30044 214 aa16.64■□□□□ 0.25
LINC00540-202ENST00000616974 TBC1D9Q6ZT07 1266 aa16.64■□□□□ 0.25
LINC00540-202ENST00000616974 MYOZ2Q9NPC6 264 aa16.64■□□□□ 0.25
LINC00540-202ENST00000616974 ECM29Q5VYK3 1845 aa16.64■□□□□ 0.25
LINC00540-202ENST00000616974 ZNF280AP59817 542 aaPredicted RBP16.63■□□□□ 0.25
LINC00540-202ENST00000616974 KIF4BQ2VIQ3 1234 aa16.63■□□□□ 0.25
LINC00540-202ENST00000616974 AACSQ86V21 672 aa16.63■□□□□ 0.25
LINC00540-202ENST00000616974 IGHDP01880 384 aa16.63■□□□□ 0.25
LINC00540-202ENST00000616974 RPS12P25398 132 aaKnown RBP16.63■□□□□ 0.25
LINC00540-202ENST00000616974 TSHZ3Q63HK5 1081 aa16.63■□□□□ 0.25
LINC00540-202ENST00000616974 GLIS2Q9BZE0 524 aaPredicted RBP16.63■□□□□ 0.25
LINC00540-202ENST00000616974 HMG20BQ9P0W2 317 aa16.63■□□□□ 0.25
LINC00540-202ENST00000616974 H7C1D1 291 aa16.62■□□□□ 0.25
LINC00540-202ENST00000616974 ITGBL1O95965 494 aaPredicted RBP16.62■□□□□ 0.25
LINC00540-202ENST00000616974 RBM46Q8TBY0 533 aaKnown RBP16.62■□□□□ 0.25
LINC00540-202ENST00000616974 OTUD7AQ8TE49 926 aaPredicted RBP16.62■□□□□ 0.25
LINC00540-202ENST00000616974 ZNF384Q8TF68 577 aa16.62■□□□□ 0.25
LINC00540-202ENST00000616974 AKAP2Q9Y2D5 859 aa16.62■□□□□ 0.25
LINC00540-202ENST00000616974 WNT10BO00744 389 aa16.61■□□□□ 0.25
LINC00540-202ENST00000616974 HMMRO75330 724 aa16.61■□□□□ 0.25
LINC00540-202ENST00000616974 DIXDC1Q155Q3 683 aa16.61■□□□□ 0.25
LINC00540-202ENST00000616974 PRAMEF18Q5VWM3 479 aa16.61■□□□□ 0.25
LINC00540-202ENST00000616974 LDHDQ86WU2 507 aa16.61■□□□□ 0.25
LINC00540-202ENST00000616974 DCTPP1Q9H773 170 aa16.61■□□□□ 0.25
LINC00540-202ENST00000616974 TTF2Q9UNY4 1162 aaKnown RBP16.61■□□□□ 0.25
LINC00540-202ENST00000616974 CHADLQ6NUI6 762 aa16.61■□□□□ 0.25
LINC00540-202ENST00000616974 GGA3Q9NZ52 723 aa16.61■□□□□ 0.25
LINC00540-202ENST00000616974 TRPM7Q96QT4 1865 aa16.61■□□□□ 0.25
LINC00540-202ENST00000616974 ADM5C9JUS6 153 aa16.6■□□□□ 0.25
LINC00540-202ENST00000616974 USP50Q70EL3 339 aaPredicted RBP16.6■□□□□ 0.25
LINC00540-202ENST00000616974 CNTROBQ8N137 903 aa16.6■□□□□ 0.25
LINC00540-202ENST00000616974 PRMT6Q96LA8 375 aaPredicted RBP16.6■□□□□ 0.25
LINC00540-202ENST00000616974 GPR108Q9NPR9 543 aa16.6■□□□□ 0.25
LINC00540-202ENST00000616974 ANGEL2Q5VTE6 544 aaKnown RBP16.6■□□□□ 0.25
LINC00540-202ENST00000616974 PNMA8AQ86V59 439 aaPredicted RBP16.6■□□□□ 0.25
LINC00540-202ENST00000616974 EDC3Q96F86 508 aaKnown RBP16.6■□□□□ 0.25
LINC00540-202ENST00000616974 CHMP4BQ9H444 224 aaKnown RBP16.6■□□□□ 0.25
LINC00540-202ENST00000616974 ARID4AP29374 1257 aaPredicted RBP16.59■□□□□ 0.25
LINC00540-202ENST00000616974 GORABQ5T7V8 394 aa16.59■□□□□ 0.25
LINC00540-202ENST00000616974 SMC1BQ8NDV3 1235 aa16.59■□□□□ 0.25
LINC00540-202ENST00000616974 KIF1BPQ96EK5 621 aa16.59■□□□□ 0.25
LINC00540-202ENST00000616974 ZBED3Q96IU2 234 aaPredicted RBP16.59■□□□□ 0.25
LINC00540-202ENST00000616974 ANTXR1Q9H6X2 564 aa16.59■□□□□ 0.25
LINC00540-202ENST00000616974 CLRN2A0PK11 232 aa16.58■□□□□ 0.25
LINC00540-202ENST00000616974 CFAP100Q494V2 611 aa16.58■□□□□ 0.25
LINC00540-202ENST00000616974 CHGBP05060 677 aa16.58■□□□□ 0.24
LINC00540-202ENST00000616974 ZAP70P43403 619 aa16.58■□□□□ 0.24
LINC00540-202ENST00000616974 CACNB3P54284 484 aa16.58■□□□□ 0.24
LINC00540-202ENST00000616974 CDAN1Q8IWY9 1227 aa16.58■□□□□ 0.24
LINC00540-202ENST00000616974 SPATA5Q8NB90 893 aa16.58■□□□□ 0.24
LINC00540-202ENST00000616974 ABCF2Q9UG63 623 aa16.58■□□□□ 0.24
LINC00540-202ENST00000616974 MYO3BQ8WXR4 1341 aa16.58■□□□□ 0.24
LINC00540-202ENST00000616974 PASKQ96RG2 1323 aa16.58■□□□□ 0.24
LINC00540-202ENST00000616974 DOCK2Q92608 1830 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms