RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RAB11FIP3O75154 756 aa20.38■□□□□ 0.85
CCDC28A-202ENST00000611852 FRAT2O75474 233 aaPredicted RBP20.38■□□□□ 0.85
CCDC28A-202ENST00000611852 C16orf71Q8IYS4 520 aaPredicted RBP20.38■□□□□ 0.85
CCDC28A-202ENST00000611852 KIF1BPQ96EK5 621 aa20.38■□□□□ 0.85
CCDC28A-202ENST00000611852 APBB1O00213 710 aa20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 FKBP1AP62942 108 aaKnown RBP20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 PNMA8AQ86V59 439 aaPredicted RBP20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 CERS5Q8N5B7 392 aa20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 EAF2Q96CJ1 260 aaPredicted RBP20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 DCTPP1Q9H773 170 aa20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 ADARB2Q9NS39 739 aaKnown RBP20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 GNL3LQ9NVN8 582 aaKnown RBP20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 H7C1D1 291 aa20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 TOMM70O94826 608 aa20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 USP17L8P0C7I0 530 aa20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 IL1RAPL2Q9NP60 686 aa20.37■□□□□ 0.85
CCDC28A-202ENST00000611852 COL1A1P02452 1464 aaPredicted RBP20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 ZBTB22O15209 634 aa20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 POTEIP0CG38 1075 aa20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 POTEJP0CG39 1038 aa20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 ZNF280AP59817 542 aaPredicted RBP20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 CHAF1AQ13111 956 aaPredicted RBP20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 EAPPQ56P03 285 aaPredicted RBP20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 GORABQ5T7V8 394 aa20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 USP50Q70EL3 339 aaPredicted RBP20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 DBNDD2Q9BQY9 259 aa20.36■□□□□ 0.85
CCDC28A-202ENST00000611852 MYH13Q9UKX3 1938 aa20.35■□□□□ 0.85
CCDC28A-202ENST00000611852 SEMA3EO15041 775 aa20.35■□□□□ 0.85
CCDC28A-202ENST00000611852 MFSD14BQ5SR56 506 aa20.35■□□□□ 0.85
CCDC28A-202ENST00000611852 KIAA0825Q8IV33 1275 aa20.35■□□□□ 0.85
CCDC28A-202ENST00000611852 DBNLQ9UJU6 430 aaKnown RBP20.35■□□□□ 0.85
CCDC28A-202ENST00000611852 HDAC1Q13547 482 aaPredicted RBP20.34■□□□□ 0.85
CCDC28A-202ENST00000611852 SAMD7Q7Z3H4 446 aa20.34■□□□□ 0.85
CCDC28A-202ENST00000611852 RBM46Q8TBY0 533 aaKnown RBP20.34■□□□□ 0.85
CCDC28A-202ENST00000611852 CCDC8Q9H0W5 538 aaPredicted RBP20.34■□□□□ 0.85
CCDC28A-202ENST00000611852 TLR7Q9NYK1 1049 aaKnown RBP20.34■□□□□ 0.85
CCDC28A-202ENST00000611852 ADAMTSL1Q8N6G6 1762 aa20.34■□□□□ 0.85
CCDC28A-202ENST00000611852 EGFRP00533 1210 aa20.33■□□□□ 0.85
CCDC28A-202ENST00000611852 RASGRF1Q13972 1273 aa20.33■□□□□ 0.85
CCDC28A-202ENST00000611852 AACSQ86V21 672 aa20.33■□□□□ 0.85
CCDC28A-202ENST00000611852 CLASRPQ8N2M8 674 aaKnown RBP20.33■□□□□ 0.85
CCDC28A-202ENST00000611852 OGFOD1Q8N543 542 aa20.33■□□□□ 0.85
CCDC28A-202ENST00000611852 TRPM4Q8TD43 1214 aa20.33■□□□□ 0.85
CCDC28A-202ENST00000611852 TBC1D22AQ8WUA7 517 aa20.33■□□□□ 0.85
CCDC28A-202ENST00000611852 LRRCC1Q9C099 1032 aa20.33■□□□□ 0.85
CCDC28A-202ENST00000611852 DENND2AQ9ULE3 1009 aa20.33■□□□□ 0.85
CCDC28A-202ENST00000611852 ARID4AP29374 1257 aaPredicted RBP20.32■□□□□ 0.84
CCDC28A-202ENST00000611852 HIRAP54198 1017 aaPredicted RBP20.32■□□□□ 0.84
CCDC28A-202ENST00000611852 TBC1D10BQ4KMP7 808 aaPredicted RBP20.32■□□□□ 0.84
CCDC28A-202ENST00000611852 LDHDQ86WU2 507 aa20.32■□□□□ 0.84
CCDC28A-202ENST00000611852 MMP14P50281 582 aa20.32■□□□□ 0.84
CCDC28A-202ENST00000611852 CCDC158Q5M9N0 1113 aa20.32■□□□□ 0.84
CCDC28A-202ENST00000611852 WDR66Q8TBY9 1149 aa20.32■□□□□ 0.84
CCDC28A-202ENST00000611852 MYOZ2Q9NPC6 264 aa20.32■□□□□ 0.84
CCDC28A-202ENST00000611852 F8W031 263 aaPredicted RBP20.31■□□□□ 0.84
CCDC28A-202ENST00000611852 GRIK5Q16478 980 aa20.31■□□□□ 0.84
CCDC28A-202ENST00000611852 KIF4BQ2VIQ3 1234 aa20.31■□□□□ 0.84
CCDC28A-202ENST00000611852 RBM26Q5T8P6 1007 aaKnown RBP20.31■□□□□ 0.84
CCDC28A-202ENST00000611852 PDS5AQ29RF7 1337 aaKnown RBP20.31■□□□□ 0.84
CCDC28A-202ENST00000611852 SMARCA5O60264 1052 aaPredicted RBP20.3■□□□□ 0.84
CCDC28A-202ENST00000611852 UQCRFS1P1P0C7P4 283 aa20.3■□□□□ 0.84
CCDC28A-202ENST00000611852 SCARF1Q14162 830 aa20.3■□□□□ 0.84
CCDC28A-202ENST00000611852 TTC39AQ5SRH9 613 aa20.3■□□□□ 0.84
CCDC28A-202ENST00000611852 SMC1BQ8NDV3 1235 aa20.3■□□□□ 0.84
CCDC28A-202ENST00000611852 BCL11AQ9H165 835 aa20.3■□□□□ 0.84
CCDC28A-202ENST00000611852 HMG20BQ9P0W2 317 aa20.3■□□□□ 0.84
CCDC28A-202ENST00000611852 HDAC9Q9UKV0 1011 aa20.3■□□□□ 0.84
CCDC28A-202ENST00000611852 CLEC11AQ9Y240 323 aa20.3■□□□□ 0.84
CCDC28A-202ENST00000611852 MCAMP43121 646 aa20.29■□□□□ 0.84
CCDC28A-202ENST00000611852 CHADLQ6NUI6 762 aa20.29■□□□□ 0.84
CCDC28A-202ENST00000611852 PI16Q6UXB8 463 aa20.29■□□□□ 0.84
CCDC28A-202ENST00000611852 ZNF512BQ96KM6 892 aaPredicted RBP20.29■□□□□ 0.84
CCDC28A-202ENST00000611852 TTF2Q9UNY4 1162 aaKnown RBP20.29■□□□□ 0.84
CCDC28A-202ENST00000611852 SALL1Q9NSC2 1324 aa20.29■□□□□ 0.84
CCDC28A-202ENST00000611852 IFIT2P09913 472 aaKnown RBP20.28■□□□□ 0.84
CCDC28A-202ENST00000611852 SPATA5Q8NB90 893 aa20.28■□□□□ 0.84
CCDC28A-202ENST00000611852 ZC3H15Q8WU90 426 aaKnown RBP20.28■□□□□ 0.84
CCDC28A-202ENST00000611852 RWDD1Q9H446 243 aaPredicted RBP20.28■□□□□ 0.84
CCDC28A-202ENST00000611852 PGAP2Q9UHJ9 254 aa20.28■□□□□ 0.84
CCDC28A-202ENST00000611852 SUGT1Q9Y2Z0 365 aa20.28■□□□□ 0.84
CCDC28A-202ENST00000611852 FSTL1Q12841 308 aa20.27■□□□□ 0.84
CCDC28A-202ENST00000611852 GCC1Q96CN9 775 aa20.27■□□□□ 0.84
CCDC28A-202ENST00000611852 AKAP11Q9UKA4 1901 aa20.27■□□□□ 0.84
CCDC28A-202ENST00000611852 IGHDP01880 384 aa20.27■□□□□ 0.83
CCDC28A-202ENST00000611852 C1QTNF8P60827 252 aa20.27■□□□□ 0.83
CCDC28A-202ENST00000611852 MAP1SQ66K74 1059 aaPredicted RBP20.27■□□□□ 0.83
CCDC28A-202ENST00000611852 WNT10BO00744 389 aa20.26■□□□□ 0.83
CCDC28A-202ENST00000611852 PRDX5P30044 214 aa20.26■□□□□ 0.83
CCDC28A-202ENST00000611852 ZGPATQ8N5A5 531 aaKnown RBP20.26■□□□□ 0.83
CCDC28A-202ENST00000611852 MTMR14Q8NCE2 650 aa20.26■□□□□ 0.83
CCDC28A-202ENST00000611852 ZBED3Q96IU2 234 aaPredicted RBP20.26■□□□□ 0.83
CCDC28A-202ENST00000611852 SERPINA10Q9UK55 444 aa20.26■□□□□ 0.83
CCDC28A-202ENST00000611852 NBPF9Q3BBW0 867 aa20.25■□□□□ 0.83
CCDC28A-202ENST00000611852 SNRKQ9NRH2 765 aa20.25■□□□□ 0.83
CCDC28A-202ENST00000611852 PCDHAC2Q9Y5I4 1007 aa20.25■□□□□ 0.83
CCDC28A-202ENST00000611852 MAST3O60307 1309 aa20.24■□□□□ 0.83
CCDC28A-202ENST00000611852 ASTN2O75129 1339 aaPredicted RBP20.24■□□□□ 0.83
CCDC28A-202ENST00000611852 LDHBP07195 334 aaKnown RBP20.24■□□□□ 0.83
CCDC28A-202ENST00000611852 HDLBPQ00341 1268 aaKnown RBP20.24■□□□□ 0.83
CCDC28A-202ENST00000611852 DLGAP5Q15398 846 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms