RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 MMP14P50281 582 aa20.89■□□□□ 0.93
TRIM28-215ENST00000601150 FKBP1AP62942 108 aaKnown RBP20.89■□□□□ 0.93
TRIM28-215ENST00000601150 BCAMP50895 628 aa20.88■□□□□ 0.93
TRIM28-215ENST00000601150 G3BP1Q13283 466 aaKnown RBP eCLIP20.88■□□□□ 0.933e-9■■■□□ 15.6
TRIM28-215ENST00000601150 C20orf194Q5TEA3 1177 aa20.88■□□□□ 0.93
TRIM28-215ENST00000601150 CERS5Q8N5B7 392 aa20.88■□□□□ 0.93
TRIM28-215ENST00000601150 MYOZ2Q9NPC6 264 aa20.88■□□□□ 0.93
TRIM28-215ENST00000601150 TFCP2Q12800 502 aa20.87■□□□□ 0.93
TRIM28-215ENST00000601150 CEP85Q6P2H3 762 aa20.87■□□□□ 0.93
TRIM28-215ENST00000601150 KIAA0825Q8IV33 1275 aa20.87■□□□□ 0.93
TRIM28-215ENST00000601150 ZBTB40Q9NUA8 1239 aa20.87■□□□□ 0.93
TRIM28-215ENST00000601150 HDAC9Q9UKV0 1011 aa20.87■□□□□ 0.93
TRIM28-215ENST00000601150 JAG2Q9Y219 1238 aa20.87■□□□□ 0.93
TRIM28-215ENST00000601150 AKAP2Q9Y2D5 859 aa20.87■□□□□ 0.93
TRIM28-215ENST00000601150 FRAT2O75474 233 aaPredicted RBP20.86■□□□□ 0.93
TRIM28-215ENST00000601150 IQSEC3Q9UPP2 1182 aaPredicted RBP20.86■□□□□ 0.93
TRIM28-215ENST00000601150 ECM29Q5VYK3 1845 aa20.85■□□□□ 0.93
TRIM28-215ENST00000601150 SURF6O75683 361 aaKnown RBP20.84■□□□□ 0.93
TRIM28-215ENST00000601150 CHAF1AQ13111 956 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-215ENST00000601150 OS9Q13438 667 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-215ENST00000601150 MFSD14BQ5SR56 506 aa20.84■□□□□ 0.93
TRIM28-215ENST00000601150 CDC37L1Q7L3B6 337 aa20.84■□□□□ 0.93
TRIM28-215ENST00000601150 DCPSQ96C86 337 aaKnown RBP20.84■□□□□ 0.93
TRIM28-215ENST00000601150 A0A1B0GUL7 405 aa20.83■□□□□ 0.93
TRIM28-215ENST00000601150 TIMM10P62072 90 aa20.83■□□□□ 0.93
TRIM28-215ENST00000601150 HTRA3P83110 453 aa20.83■□□□□ 0.93
TRIM28-215ENST00000601150 SCARF1Q14162 830 aa20.83■□□□□ 0.93
TRIM28-215ENST00000601150 TBC1D22AQ8WUA7 517 aa20.83■□□□□ 0.93
TRIM28-215ENST00000601150 GLIS2Q9BZE0 524 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-215ENST00000601150 GNL3LQ9NVN8 582 aaKnown RBP20.83■□□□□ 0.93
TRIM28-215ENST00000601150 GGA3Q9NZ52 723 aa20.83■□□□□ 0.93
TRIM28-215ENST00000601150 NOP58Q9Y2X3 529 aaKnown RBP20.83■□□□□ 0.93
TRIM28-215ENST00000601150 F8W031 263 aaPredicted RBP20.82■□□□□ 0.92
TRIM28-215ENST00000601150 TRAF5O00463 557 aa20.82■□□□□ 0.92
TRIM28-215ENST00000601150 RRP1P56182 461 aaKnown RBP20.82■□□□□ 0.92
TRIM28-215ENST00000601150 RPAP2Q8IXW5 612 aaPredicted RBP20.82■□□□□ 0.92
TRIM28-215ENST00000601150 CREBZFQ9NS37 354 aa20.82■□□□□ 0.92
TRIM28-215ENST00000601150 ASTN2O75129 1339 aaPredicted RBP20.81■□□□□ 0.92
TRIM28-215ENST00000601150 TMEM88BA6NKF7 163 aa20.81■□□□□ 0.92
TRIM28-215ENST00000601150 ADORA1P30542 326 aa20.81■□□□□ 0.92
TRIM28-215ENST00000601150 KRT26Q7Z3Y9 468 aa20.81■□□□□ 0.92
TRIM28-215ENST00000601150 USP48Q86UV5 1035 aa20.81■□□□□ 0.92
TRIM28-215ENST00000601150 NEUROD6Q96NK8 337 aa20.81■□□□□ 0.92
TRIM28-215ENST00000601150 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.81■□□□□ 0.92
TRIM28-215ENST00000601150 WNT10BO00744 389 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 SEMA3EO15041 775 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 HMMRO75330 724 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 PHKA1P46020 1223 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 FMR1Q06787 632 aaKnown RBP eCLIP20.8■□□□□ 0.921e-10■■■□□ 17.4
TRIM28-215ENST00000601150 DLGAP5Q15398 846 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 NBPF9Q3BBW0 867 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 ANGEL2Q5VTE6 544 aaKnown RBP20.8■□□□□ 0.92
TRIM28-215ENST00000601150 CCDC102BQ68D86 513 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 SULF1Q8IWU6 871 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 XAGE2Q96GT9 111 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 GPR108Q9NPR9 543 aa20.8■□□□□ 0.92
TRIM28-215ENST00000601150 PITPNM2Q9BZ72 1349 aa20.79■□□□□ 0.92
TRIM28-215ENST00000601150 MTMR14Q8NCE2 650 aa20.79■□□□□ 0.92
TRIM28-215ENST00000601150 WDR66Q8TBY9 1149 aa20.79■□□□□ 0.92
TRIM28-215ENST00000601150 TTF2Q9UNY4 1162 aaKnown RBP20.79■□□□□ 0.92
TRIM28-215ENST00000601150 COL1A1P02452 1464 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-215ENST00000601150 ZBTB22O15209 634 aa20.78■□□□□ 0.92
TRIM28-215ENST00000601150 DNAJC5GQ8N7S2 189 aa20.78■□□□□ 0.92
TRIM28-215ENST00000601150 ZBED3Q96IU2 234 aaPredicted RBP20.78■□□□□ 0.92
TRIM28-215ENST00000601150 DENND2AQ9ULE3 1009 aa20.78■□□□□ 0.92
TRIM28-215ENST00000601150 ADM5C9JUS6 153 aa20.77■□□□□ 0.92
TRIM28-215ENST00000601150 CFAP100Q494V2 611 aa20.77■□□□□ 0.92
TRIM28-215ENST00000601150 HSP90AB4PQ58FF6 505 aa20.77■□□□□ 0.92
TRIM28-215ENST00000601150 TNNI3KQ59H18 835 aa20.77■□□□□ 0.92
TRIM28-215ENST00000601150 GORABQ5T7V8 394 aa20.77■□□□□ 0.92
TRIM28-215ENST00000601150 ERC1Q8IUD2 1116 aa20.77■□□□□ 0.92
TRIM28-215ENST00000601150 SIRT2Q8IXJ6 389 aa20.77■□□□□ 0.92
TRIM28-215ENST00000601150 SUGT1Q9Y2Z0 365 aa20.77■□□□□ 0.92
TRIM28-215ENST00000601150 FPGT-TNNI3KV9GXZ4 949 aa20.77■□□□□ 0.92
TRIM28-215ENST00000601150 RBM5P52756 815 aaKnown RBP eCLIP20.76■□□□□ 0.91
TRIM28-215ENST00000601150 GRIK5Q16478 980 aa20.76■□□□□ 0.91
TRIM28-215ENST00000601150 CST9Q5W186 159 aa20.76■□□□□ 0.91
TRIM28-215ENST00000601150 SERPINA10Q9UK55 444 aa20.76■□□□□ 0.91
TRIM28-215ENST00000601150 EXOC6BQ9Y2D4 811 aa20.76■□□□□ 0.91
TRIM28-215ENST00000601150 SPDYE2BA6NHP3 402 aa20.75■□□□□ 0.91
TRIM28-215ENST00000601150 CELF2O95319 508 aaKnown RBP20.75■□□□□ 0.91
TRIM28-215ENST00000601150 SPDYE6P0CI01 402 aa20.75■□□□□ 0.91
TRIM28-215ENST00000601150 KLRG1Q96E93 195 aa20.75■□□□□ 0.91
TRIM28-215ENST00000601150 ZNF408Q9H9D4 720 aa20.75■□□□□ 0.91
TRIM28-215ENST00000601150 MAST3O60307 1309 aa20.75■□□□□ 0.91
TRIM28-215ENST00000601150 MYO1BO43795 1136 aa20.74■□□□□ 0.91
TRIM28-215ENST00000601150 HDLBPQ00341 1268 aaKnown RBP20.74■□□□□ 0.91
TRIM28-215ENST00000601150 RASGRF1Q13972 1273 aa20.74■□□□□ 0.91
TRIM28-215ENST00000601150 DLK2Q6UY11 383 aa20.74■□□□□ 0.91
TRIM28-215ENST00000601150 APOBEC3FQ8IUX4 373 aaKnown RBP20.74■□□□□ 0.91
TRIM28-215ENST00000601150 ABT1Q9ULW3 272 aaKnown RBP20.74■□□□□ 0.91
TRIM28-215ENST00000601150 PCDHAC2Q9Y5I4 1007 aa20.74■□□□□ 0.91
TRIM28-215ENST00000601150 PDS5AQ29RF7 1337 aaKnown RBP20.74■□□□□ 0.91
TRIM28-215ENST00000601150 SALL1Q9NSC2 1324 aa20.74■□□□□ 0.91
TRIM28-215ENST00000601150 CRKP46108 304 aa20.73■□□□□ 0.91
TRIM28-215ENST00000601150 PRMT6Q96LA8 375 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-215ENST00000601150 CEP350Q5VT06 3117 aa20.73■□□□□ 0.91
TRIM28-215ENST00000601150 UQCRFS1P1P0C7P4 283 aa20.72■□□□□ 0.91
TRIM28-215ENST00000601150 TEKT1Q969V4 418 aa20.72■□□□□ 0.91
TRIM28-215ENST00000601150 CDCA5Q96FF9 252 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms